LOCUS       XM_039100401            2622 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus T cell-interacting, activating
            receptor on myeloid cells 1 (Tarm1), transcript variant X1, mRNA.
ACCESSION   XM_039100401
VERSION     XM_039100401.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2622
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2622
                     /gene="Tarm1"
                     /note="T cell-interacting, activating receptor on myeloid
                     cells 1; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 22 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:499065"
                     /db_xref="RGD:1564272"
     CDS             170..1075
                     /gene="Tarm1"
                     /codon_start=1
                     /product="T-cell-interacting, activating receptor on
                     myeloid cells protein 1 isoform X1"
                     /protein_id="XP_038956329.1"
                     /db_xref="GeneID:499065"
                     /db_xref="RGD:1564272"
                     /translation="MICRLLSLLCLRLCVGQIGIPENGPPSKPSLSAWPSTVLPTKSN
                     VILRCKSPTPSKHFILKKEGFVLDTVKPYNLTEEMANFHFTELRQSDGGHYTCEYYSK
                     WSHNTLSQPSDALFLLVTGYLPKPSFQAHHRGTVTAGSTVTLQCQKAGSVLGPIWFAL
                     LKVGHSTPVQTRGSAGMVLDFSLQNVTARDAGKYSCVYYQAKAPYRASDPSNLLEISV
                     IDNHLPQDSAASTFPPQPKETSYKPLDTMTEDYTMGNLIRIGVAAVIILIVGGFLVEA
                     WHSERLSPNRQWDTQGKGCLPKANT"
ORIGIN      
        1 agatagcatc agcacatttc ctgagagtga atgtaggagg aaggaaccaa gaagccactt
       61 caaaaccaat cctgcctact ccctgaggtt ggagagactg atgccctggc cacactcttc
      121 tgccgatagt agaccagcgg aagacccttg aaccagcctc tgagccacca tgatctgtag
      181 gctcctttcc cttctctgcc tgcggctgtg tgttgggcaa ataggcattc ctgaaaatgg
      241 gcctccttcc aagcccagcc tcagtgcctg gcccagcaca gtgcttccca ctaagagcaa
      301 cgtgatactg cgatgtaaga gccctacccc aagtaaacac ttcatcctca aaaaggaagg
      361 ttttgttttg gatactgtaa agccgtacaa tttgactgag gagatggcta actttcattt
      421 cactgagcta cgacagagtg atggcggaca ctatacctgt gaatactaca gcaaatggtc
      481 ccacaacaca ctgtcacagc ccagtgatgc tcttttcctg ttggtcacag ggtacttgcc
      541 taagccctcc ttccaagccc accacagggg cacagtgact gcaggaagca cggtgacttt
      601 gcaatgccag aaagcaggca gtgtactcgg acccatatgg tttgcattgc tgaaggtggg
      661 acactcaact cctgtgcaga cgaggggctc agcaggaatg gtattagact tctctcttca
      721 gaatgtaaca gccagagacg ccgggaaata cagctgtgtt tactatcagg caaaggctcc
      781 ctatcgggcc tcagatccca gcaatctcct tgagatctct gtgatagaca accatctacc
      841 tcaagattct gctgcatcaa ctttcccacc acaaccaaag gaaacctcat acaagcccct
      901 cgataccatg acagaagact ataccatggg taacctcatc cggatcggtg tggctgctgt
      961 aatcatactg atagtaggag gctttctggt cgaagcctgg catagtgagc ggctatctcc
     1021 aaatagacag tgggacacac aggggaaagg atgtcttcct aaagcaaaca cgtgaaagac
     1081 tgttttcctg aagcagacac aggagaaagg acgtttcgat atagggaact cgtgaaagga
     1141 cgcttgatga aggagtttaa acgtgacccc cacagagagt gggagagatg cactgagcct
     1201 tggtttggtt tgccctgcct tgctgttttt cactaaacac acacacacac acacacacac
     1261 acacacacac acatcggttc gccttacata gcactgttga gctcaactta taatgctgcc
     1321 attgtgagat gctcgcccaa gaactgcttg tggagttctg gtggcatctt gccacttctg
     1381 tggcctcacc ttaggcttgt tggtgagcct agtggattcc tcaggattga actacagctg
     1441 ctggctcgtg cctcatgtct gcctgcctag actggtctgc agctgctggg tctttttggt
     1501 gtttgctaca ggactgacct gttgagaaag atcgagctca cccacaaaga actattgccg
     1561 aataggtcca cttcccccat gtcctaataa cttttctctt ctgctacctc tgttggttgg
     1621 tgggttagag gagaggttgt gaactccaaa agactaccaa ggacccaagt ccaatgcagt
     1681 cgcattaggg tctctttatt caagctgggg cttggtctcc ccgccaacct tgacacagca
     1741 ggaaggggga gccctgagcc tagtttcagg caagcagtta tagaggcaag gaggtggtat
     1801 ctagcctagt atacctctga ttaggggacc attatggact ttaacataat tgactgctgc
     1861 tgggagccaa accataaact taacttctgc tttcctcctg attggtggtt gttaggaaga
     1921 agtgaagtgt caggggcagg cttgtaacct ggaggtgcag atttgttggg gagtaacctg
     1981 gaaactggtg ctaggtaccg gcctgtttgt ttacttgagc tcaaccttac ttaggttagg
     2041 ttctctaaaa cgttgtctga acccaaaacg gagcatttag gaaagattat gtctttcaaa
     2101 catctccaga taggaaggaa gggaaaaggg ggtgaatgag aatccctcca atctagaaat
     2161 tgccttcctc tcaattcagt tctgtccttc cgtcccacag tgccccggga gaaaaatgga
     2221 tccttgcatc aaattatctc tattaattta cgtgcaacct tgatgcaggg tttggggaat
     2281 catccaggga caggctgcct catcctgact cttcacatag aacagaggcc tggacataca
     2341 tgtctgcgtg cacacacaca cacacacact ctctctctct ctctctcttc ttcttctttt
     2401 tttttttttt ttaagtacat tttccccctt tagtgttttg gagacagatc tctctattat
     2461 atagtcctgg tggttgtaga actccctacg tataccggac tggccttgaa ctcacagaga
     2521 tccaactgcc tcttcattcc agtgctggga ataaaggtgt gtgtcgccac ccccaaaccc
     2581 aatttgcatt ttcttaagaa tatacatgtt gctgggcagt gg
//
