LOCUS       XM_039092783            3497 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane anterior posterior
            transformation 1 (Tapt1), transcript variant X1, mRNA.
ACCESSION   XM_039092783
VERSION     XM_039092783.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092783.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3497
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3497
                     /gene="Tapt1"
                     /note="transmembrane anterior posterior transformation 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 67 ESTs, 1 long SRA read, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 207 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:305386"
                     /db_xref="RGD:1309656"
     CDS             52..1746
                     /gene="Tapt1"
                     /codon_start=1
                     /product="transmembrane anterior posterior transformation
                     protein 1 homolog isoform X1"
                     /protein_id="XP_038948711.1"
                     /db_xref="GeneID:305386"
                     /db_xref="RGD:1309656"
                     /translation="MAGVCDAAAPGEGGGGGADGPERTGRGEAEQPGGGGHGPAPQHT
                     ETLGFYESDRRREKRRGRAELSLLRFLSAELTRGYFLEHNEAKYTERRERVYTCMRIP
                     RELEKLMFFGIFLCLDAFLYVFTLLPLRVFLALFRLLTLPCYGLRDRRLLQPAQVCDI
                     LKGVILVICYFMMHYVDYSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDAL
                     YWTATEPKERKRAHIGVIPHFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMM
                     SNNFVEIKGSVFKKFEKNNLFQMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLWV
                     LFPDVCMVIASEIAVDIVKHAFITKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYS
                     DSVARRMGFIPLPLAVLLIRVVTSSIKVQGILSYACVILFYFGLISLKILNSIVLLGK
                     SCQYVKEAKMEEKLFNPPPASTPAKPSNKSQSKCKSSQGLSTEENLSASITSQPVHQK
                     ENVIPLLVTSNSDQFLTTPDGDEKDITQENSELKHRSSKKDLLEIDRFTICGNRID"
ORIGIN      
        1 cgggcgggcg gctggaggga ggtggcgggg acagtgtgtg gctttcggaa catggcgggc
       61 gtctgcgacg cggccgcccc gggagaaggc ggcggtggcg gcgcggacgg ccccgagcgg
      121 acgggccgcg gcgaggcgga gcagccgggt ggtggcggcc atgggcccgc gccccagcac
      181 acagagacgc tgggcttcta cgagagcgac cggcggcggg agaagcgccg cggccgcgca
      241 gaattgtcat tattgaggtt cctcagtgct gaactgacaa gagggtactt cctcgaacat
      301 aacgaggcca agtatacaga gcgaagagaa agggtgtaca cttgtatgcg aataccaaga
      361 gaattggaaa agcttatgtt ttttggaata tttttgtgcc tcgatgcctt tctgtatgtg
      421 ttcaccctgc ttcctctaag agtctttctg gctctgttca gactcctcac tctgccttgc
      481 tatggtttaa gggacagacg tttgcttcag cccgcacagg tgtgtgacat tttgaagggt
      541 gtcattttag taatctgcta tttcatgatg cattatgttg actattctat gatgtaccac
      601 ctgataagag gccaatctgt catcaaactc tatatcatct acaacatgct agaggtagcc
      661 gatcgtctgt tctcctcatt tggacaagat atcttagatg ctctgtactg gacagccaca
      721 gagccgaaag aaagaaaaag agcacacatc ggagtaattc ctcacttctt catggctgtt
      781 ctctatgtct ttctacatgc aattcttatc atggttcaag cgacaactct caatgtagct
      841 tttaactctc acaacaagtc actgcttact atcatgatgt ctaataattt tgttgaaatt
      901 aaaggaagtg tattcaagaa gtttgaaaag aacaatctct ttcagatgtc aaatagtgat
      961 atcaaggaac gattcacaaa ttacgtgctt ttgctaatag tttgcttaag aaacatggag
     1021 cagttctctt ggaatccaga tcatctctgg gtgttgtttc ctgacgtctg tatggtgatt
     1081 gcatcagaaa ttgctgtgga tattgtaaag catgccttta tcaccaaatt caatgacatc
     1141 actgcagatg tctacagtga atatagagcc agccttgctt ttgaccttgt tagcagccga
     1201 cagaaaaatg catacacaga ctacagtgac tcggtagcac gaagaatggg atttattcct
     1261 ctcccactag cggtcttact catcagagtt gtaacaagct caattaaagt gcaaggaatc
     1321 ctgtcctatg cctgtgtcat actcttctat tttgggttga tctccttgaa aatacttaat
     1381 agtattgtgc tgttgggaaa gtcatgtcaa tatgtgaaag aagccaaaat ggaagagaag
     1441 ctatttaatc ctcccccagc cagcacacct gcaaaaccct ccaataaatc ccagagcaag
     1501 tgcaagtcct ctcaaggcct ctccacagaa gaaaacctgt ctgcctccat caccagccag
     1561 cctgttcatc agaaagaaaa tgtcataccc ttacttgtga ccagcaattc tgatcagttc
     1621 ctgacaaccc cagatggtga tgagaaggac ataacacagg aaaactcgga gttaaaacac
     1681 agatcctcaa agaaagattt gttagagata gacaggttca caatttgtgg aaaccggatt
     1741 gactgagttt gtggctgaga tgaagatgct gggtgccagg acacttgcta aacacggcac
     1801 ttaaatattt atttaaaaac ttaaattatt aatggcaagc aaatcttagt atcttcttcc
     1861 agtaatgtgg ccttgtagaa gggcagatca cggaacagcg atggcctctg gccttgactc
     1921 tggatgctga cagttgatga acacttcctc ctgcttgacc aacagcagtg ccacttccgg
     1981 ccctggccag agcactgcaa aagctccttt tctttgtcag cctgggcttc cagaatgttg
     2041 ggttttcctc aaggcctctt cagtataagg acacacctgg gaaactgtga agcttttacc
     2101 atgagttacc tttccagcct cagactgttt ccacacactc tttccaaact tttctccatc
     2161 tgccaaagca ttgacaagtt attacatata agtccagata aatgttctca ccaccagagt
     2221 catccttggc aatacatctg agctagtcag agtaaaaggc tacttaacta caaggtgacg
     2281 aatagcagat cctataagaa acaaggagct cttggcccag tcattaccta atgaaggtca
     2341 cgtgtcactg aaaaatgctt cctgctgcct cagttactct cagggcagag tgtgagctat
     2401 gtgacacagg cacaatggca gtgaatggca cagagcaatg tcaactccag gtgcagtgtg
     2461 accaggtttc actttaaggc taattgcttc atcggttatt ccaagttaaa ggatttggtg
     2521 ttgaattggc tgaaaagctg ttgctagcaa caggctagtt ttggggtttt atttcgtttt
     2581 gaataacagt tttaaagtat tctcagcaga ttgagcagca tcgccttgct gggactgtaa
     2641 aatgcttttg tctttctgtg ggtgtgttct gtgtagagag gagatggtga gtgtttgtgc
     2701 tgggagagac cttcacatga ccgaccgtaa atgggatgtt tgggacacga gggggtacta
     2761 cagcgtggac actgtaacta gcaaccaaaa ggtgctctag gttttctgtt tgagataaag
     2821 atgctattcc tgcttcatta ctacctattg gcatcaaagg acaagttctt gtcaccccac
     2881 tttatcttaa gaatcttttc tgcacttctc ttagaaaaaa agttgaccgt ttctgactct
     2941 ttcctatgct gtcttctgaa actcagttct catgcaaaca ctttgggcag agatggcaaa
     3001 ttttaagtgg tttacccgta tcctgtttaa gtacaaaact agtccggatg cctttgagct
     3061 ccaggagggt ttctaaggtt ttgcactaac agaatctaca ggtagctgtt ggagatgcta
     3121 tatatttatg ccttgtaaaa ccaggaagca gtttaagttt aaaatgaaca tttttattct
     3181 tttgtgtatg ttttagtggg gccccacttc taaacttttt tttttaacaa aagaaagtat
     3241 ccttggcaac caggggaggt gcagagaaag ctttgccaaa tgcggccctg gtcagaacaa
     3301 gaacacggcc tagatgtatc tttttgttcg cttggatttt ctgtttctgt gctattctct
     3361 gaagattgat ttcctttgca gatgctcttg ggagtgtgga tgatgctcac ttctgtcata
     3421 atggcattca gtactaattt tataagtgca tcttgtgtga aactcaataa attcaatttt
     3481 ataatctttt ttaaaaa
//
