LOCUS       NM_001106622            1886 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus TAP binding protein-like (Tapbpl), mRNA.
ACCESSION   NM_001106622 XM_001063642 XM_232355
VERSION     NM_001106622.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1886)
  AUTHORS   Morozov GI, Zhao H, Mage MG, Boyd LF, Jiang J, Dolan MA, Venna R,
            Norcross MA, McMurtrey CP, Hildebrand W, Schuck P, Natarajan K and
            Margulies DH.
  TITLE     Interaction of TAPBPR, a tapasin homolog, with MHC-I molecules
            promotes peptide editing
  JOURNAL   Proc Natl Acad Sci U S A 113 (8), E1006-E1015 (2016)
   PUBMED   26869717
REFERENCE   2  (bases 1 to 1886)
  AUTHORS   Boyle LH, Hermann C, Boname JM, Porter KM, Patel PA, Burr ML,
            Duncan LM, Harbour ME, Rhodes DA, Skjodt K, Lehner PJ and Trowsdale
            J.
  TITLE     Tapasin-related protein TAPBPR is an additional component of the
            MHC class I presentation pathway
  JOURNAL   Proc Natl Acad Sci U S A 110 (9), 3465-3470 (2013)
   PUBMED   23401559
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473964.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_232355.4, XM_001063642.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00155322, SAMD00155337
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1886
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1886
                     /gene="Tapbpl"
                     /note="TAP binding protein-like"
                     /db_xref="GeneID:297602"
                     /db_xref="RGD:1307893"
     exon            1..396
                     /gene="Tapbpl"
                     /inference="alignment:Splign:2.1.0"
     CDS             333..1673
                     /gene="Tapbpl"
                     /note="tapasin-related protein"
                     /codon_start=1
                     /product="tapasin-related protein precursor"
                     /protein_id="NP_001100092.1"
                     /db_xref="GeneID:297602"
                     /db_xref="RGD:1307893"
                     /translation="MGWEPSWCLLLCLAVSGAAGTDPPTEERRWQAVDIVLDCFLVTE
                     DKHRGAFGSSEDREKALLVLKQVPVLDDGSLEGFTDFQGSAEARQDSPIIFEASVDLV
                     QIPQAEALLHADCSGKAVTCEIAQYFLQARQEATFEKADWFISNMQVSRGGPSVSIVM
                     KTLRDDEAGAVRHPSLNIPLSPQGTVKTKVEFQVTAETQTLNQLLGSSVSLPCRFSMA
                     PGLDLTGVEWRLQHKGSGQLVYSWKTGQGQAKRKGATLKPEKLLRAGDASLTLPNLTL
                     KDEGNYICQISTSLYQAQQIVPLNILASPKVQLILANKDPLPSLICSIAGYYPLDVVV
                     TWIREELGGIPAQVSGASFSSLRQNMMGTYSISSTVTAEPGPTGATYTCQVAHVSLEE
                     PLTVSMRVLPNTEQRGALGVIVASILFLFALLLLGLHRQQASSSKSTKSVRHSE"
     exon            397..627
                     /gene="Tapbpl"
                     /inference="alignment:Splign:2.1.0"
     exon            628..900
                     /gene="Tapbpl"
                     /inference="alignment:Splign:2.1.0"
     exon            901..1239
                     /gene="Tapbpl"
                     /inference="alignment:Splign:2.1.0"
     exon            1240..1545
                     /gene="Tapbpl"
                     /inference="alignment:Splign:2.1.0"
     exon            1546..1629
                     /gene="Tapbpl"
                     /inference="alignment:Splign:2.1.0"
     exon            1630..1886
                     /gene="Tapbpl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aatctatctt ctggctccac cctctctcca gccttctcat agttggggct gatgggaaac
       61 ctgatgtggt gataccagct tttgaaacct tctggggatt tcttgggtgc agggtggaca
      121 aaagggagta ccgggagcag agttctggct actgctgttt ctggcctcgg gtcacagagg
      181 cagttgaagt gaaagcgaaa gagaaaccag taagaacaga gaacacaggt actaagtgag
      241 gctgctcaaa gaaccccctc ttcagccaga gatctctagc aggggaactg tggagaaggc
      301 agccagcgag gaatcgcccg agagcagcct ccatgggctg ggagcccagc tggtgtctgc
      361 tgctctgttt ggctgtctct ggggcggcag ggactgaccc cccgacagaa gaaagacggt
      421 ggcaggccgt ggacatcgtc ttagactgct tcttggtgac agaagacaag catcgcgggg
      481 cttttggcag cagtgaggac agggagaagg ccctgcttgt actgaagcag gtgccggtgc
      541 tggatgatgg ttccctggag ggcttcacag atttccaagg gagcgcagag gccagacaag
      601 attcaccgat tatctttgag gcgtccgtgg acttggtaca gattccccag gcagaggctt
      661 tgctccacgc tgactgcagc gggaaggcgg tgacctgtga gatcgcccag tatttcctcc
      721 aggccagaca agaggccact tttgagaaag cagattggtt catcagcaac atgcaggttt
      781 ctagaggggg gcccagtgtc tccatagtga tgaagactct aagagatgat gaagctggag
      841 ctgtccggca cccttcgctg aacatacccc tgagccccca gggcacagtg aagactaaag
      901 tggagttcca ggtgacagca gagacccaaa ccctgaatca gctgctgggg tcctctgtgt
      961 ccctgccctg caggttctcc atggcaccag gcctggacct caccggcgtg gaatggaggc
     1021 tacagcataa aggcagtggc cagctggtgt acagctggaa gacagggcag gggcaggcta
     1081 agcgcaaggg cgctacgctg aagcctgaga agctcctcag ggcgggagat gcctctctca
     1141 ccttacccaa cctcactctg aaggatgagg ggaactatat ctgccagatc tctacctctc
     1201 tgtaccaagc ccagcagatc gtgccgctta acatcctagc ttcccccaaa gtacagctga
     1261 tcttggcaaa caaggatcca ctgccctccc tcatctgcag cattgctggc tactaccctc
     1321 tggatgtggt ggtgacgtgg attcgagaag agctgggtgg aattccagcc caagtctctg
     1381 gtgcctcctt ctccagcctc agacagaaca tgatgggaac ctacagcatt tcttccacgg
     1441 tgacagccga gccaggcccc acaggtgcca cttacacctg ccaagttgcc cacgtctccc
     1501 tggaggagcc cctgacagtc agcatgaggg ttttgccaaa cacagagcaa agaggagcct
     1561 tgggagtcat cgttgccagc atcctcttcc tttttgcgct cttgctcctg ggacttcata
     1621 gacagcaagc ttcatcatca aagtccacca agtctgtgag gcactctgag tagccgcttt
     1681 cctgcctccg agtacaaaga aaagctctcg tgttctagct acctaagaac cctgtgttga
     1741 ggtgtgggac tgagacgggc ctgaaggagg cagcacattg ggagtgaggt actgaccctg
     1801 gtctgtacta gtctctgcct tcctgtatta tagagaagag aaccctgggc tgatgaaagg
     1861 aacgggacaa gagatgttta gaaatg
//
