LOCUS       XM_226428               6534 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transport and golgi organization 6
            homolog (Tango6), transcript variant X1, mRNA.
ACCESSION   XM_226428
VERSION     XM_226428.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 9, 2024 this sequence was replaced by
            NM_001427103.1.
            
            On Jan 21, 2021 this sequence version replaced XM_226428.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6534
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6534
                     /gene="Tango6"
                     /note="transport and golgi organization 6 homolog; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 16 ESTs, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     121 samples with support for all annotated introns"
                     /db_xref="GeneID:307816"
                     /db_xref="RGD:1559841"
     CDS             89..3343
                     /gene="Tango6"
                     /codon_start=1
                     /product="transport and Golgi organization protein 6
                     homolog isoform X1"
                     /protein_id="XP_226428.6"
                     /db_xref="GeneID:307816"
                     /db_xref="RGD:1559841"
                     /translation="MAASVQAAAAPSGVLGTCGLEQILEALKLLLSPGGSGSTSLQNT
                     KHDVLLETLKSNLSALEAKFLKDAQWKKLKTLRDEIADKAEWPQSSEDITWSFTSQTL
                     LLLLCLKEIMTRLVAEFNPGKPNPRTPEAAPALSPDTLSVSQQKTFQSVLQFVVTLGV
                     CPYLMPGVGVPLRDRTEFGAVVQGIVRLEAAPHATRRLYICCRVLLDLAQHASLGSLI
                     FCRHFGDIAAGLCQLGFCPTKRKPPVPVEEVLTEEERTLSRQALRDILDQVYQPLAVR
                     ELLILQGGSPQSCTDVKTKLRCPAPAWLRRLCGQLLSERLMRPNGVQAVVRGILEGAG
                     AGAAGGSDAEATAADWKKCDLIAKILASCPQQSLSPESYYKDICPQILDLFHLQDKLT
                     ARQFQRVATTTFTTMLRERPELAPKYLLQPMLAPLHRCSTTAEIPESDMVPGTVLVTE
                     EELSRCVEDVFKVYVVANEPLPVLLDSLLPLLGVFFSLYCFTQQSASHIRSLCQEILL
                     WALVKLERKRAIASLRGFSGLDKAVPALHPQCQFRAATHGGIVITVKEALSDDEDEAL
                     YQKVSSEQSQMEHLGDLLLHCQPCGLAGDFFIFCLKELSHLLEENEAEFTPKPPCSTS
                     LLELEQHQTLLIEDQERKLLVLQLLAVLCEKMSEQIFTHITQVVDFVAATLQRACAGL
                     AHEAESTVGSQTLSMAMGLVAAMLGGAVQLKSSDFVVLKQLLPLLEKVSNTYPDPVIQ
                     ELAVDLRITISTHGAFSTEAVSTAAQSTLNKKDPEQKIKEQRQTSYDASTEGTQNRPE
                     QEQNPLRTGQGSSEPCTATSQPPGNITTEQFREVLLSACDPQVPTRAAALRTLSRWVE
                     QREGRALEEQKKLLQIFLENLEHEDSFVYLSAIQGVALLSDVYPEEILVDLLARYDSS
                     KDKHTPETRMKVGEVLMRIVRALGDMVSKYREPLIHTFLRGVKDPDGAHRASSLSNLG
                     ELCQRLDFLLGPVVHEVTICLTAVAKTDTDVQVRRAAVHVVVLLLRGLSQKATEVLSD
                     VLKDLYHLLKHVVRLEPDDVAKIQAQLALEELDEIMRNFLFPPQKLEKKIMVLP"
ORIGIN      
        1 gcacgcctcc cgccacatcc aaaatggcgg ccgcgctggt ccactgtagt gtctgagcgt
       61 atcgcaagtg gctagctcca ctccaatcat ggcggcctcc gttcaggcgg cggctgcgcc
      121 gagtggcgtt ctggggacat gtggtttgga gcagattctg gaagcgctga agctgctgct
      181 gagcccggga ggatcaggct caacttcact acagaacaca aaacacgatg tcctactgga
      241 gactcttaaa tctaacctgt ctgctttgga ggccaagttt ctgaaggatg ctcagtggaa
      301 gaaactcaaa accctaagag atgaaattgc tgataaggct gaatggccac agagctctga
      361 ggatatcacg tggagtttca cctctcaaac cttgttgctg ctgctgtgtc tgaaggaaat
      421 catgacccgc cttgtagctg agttcaatcc tggcaaacct aacccgagga ctccagaagc
      481 tgcccctgcc ctcagtccgg atacactcag cgtctcccaa cagaagacct tccagtccgt
      541 tctgcagttt gtagtcacct tgggtgtctg cccctacctc atgcctggtg tgggagtccc
      601 tctgagagac aggactgagt ttggagctgt tgttcagggt attgtacgtc tggaggctgc
      661 cccgcatgcc acccggagac tgtacatctg ctgcagggtc ctcctcgacc tggctcagca
      721 tgcttctctg gggagcttga ttttttgccg ccattttggg gatattgcag caggtctgtg
      781 ccaactagga ttctgcccaa ccaaaagaaa accaccagta cctgtggaag aggtcttaac
      841 agaagaggaa agaaccctgt caaggcaggc cttgagagac atcttggatc aagtctatca
      901 accattagct gtccgggaat tacttatcct ccagggagga tcaccccagt cctgtacaga
      961 tgtgaagacg aagctaaggt gtccggcccc agcatggctc cgccgtctct gtgggcagct
     1021 gctctctgaa aggttgatga gacccaatgg cgttcaggca gtagtccggg gcattttgga
     1081 aggagcaggt gcgggggcgg ctggtgggag tgatgccgag gccacagctg ctgactggaa
     1141 gaagtgtgac ttgattgcaa agattctggc ctcttgtccc cagcagtccc tttccccaga
     1201 gagctactac aaggacatct gcccgcagat tctggactta ttccatcttc aagataaact
     1261 gacagcacgg cagtttcaga gagtggctac taccaccttc acgactatgt tgagggaacg
     1321 cccagaactg gccccaaagt atttgcttca gcccatgtta gcgcctctgc atcgatgctc
     1381 gaccacagca gagattccag agagcgacat ggtgccagga actgttttgg tgactgaaga
     1441 ggaacttagt cgatgtgttg aagacgtgtt taaggtttat gtggtggcaa atgagcctct
     1501 cccagtgttg ctggactcgc tgctcccact ccttggagtg ttcttctctc tctactgttt
     1561 tactcagcag agtgcatctc acataaggtc actctgccaa gagatcttgt tatgggctct
     1621 ggtgaagctg gaaaggaaga gggcaattgc cagcctgaga ggattttcag ggttggacaa
     1681 agctgtgccc gccctccatc ctcagtgtca gtttagagct gctacgcacg gtggcattgt
     1741 gattactgtc aaagaggccc ttagtgatga tgaagatgag gccctgtacc agaaggtgtc
     1801 ttcagagcag agccagatgg agcatcttgg ggacttgctg ttgcactgcc agccgtgtgg
     1861 cttggcagga gatttcttca tcttttgttt gaaggagttg tctcatctgc tggaggaaaa
     1921 cgaagcagag ttcactccca agcccccctg ctctacaagc ctcctggaat tagagcaaca
     1981 ccagactctg cttatagaag accaggagcg gaagctgttg gtcttgcagt tgctggccgt
     2041 tctgtgtgag aaaatgtcag agcagatatt cacacacatc acccaggtag tggactttgt
     2101 agcagcaaca ctgcagagag catgtgcagg cctggctcat gaggcagaga gcaccgtggg
     2161 atcgcaaaca ctgagcatgg ctatggggct agtggctgcc atgctcggag gagctgttca
     2221 gttgaagtca agtgattttg tggtcctgaa gcagctgctg cctctgttgg agaaggtctc
     2281 taacacatac cctgaccctg tcatccaaga actcgctgtc gatctccgaa ttaccatctc
     2341 cactcatgga gccttctcca ctgaggctgt cagcacggca gcccagagta ccctaaacaa
     2401 aaaagaccca gaacagaaaa taaaagaaca gcgacaaacc agttatgatg catccacaga
     2461 aggaactcag aaccgacctg aacaagagca gaaccccctc agaacaggcc aaggttccag
     2521 tgagccctgc actgccacaa gccagccacc gggaaatata accacagaac aattccggga
     2581 ggttctctta tctgcctgtg atccccaggt tccaacccgg gctgctgccc tccgcaccct
     2641 ttcccgctgg gtagagcaga gagaagggag agccctggag gaacaaaaga agcttcttca
     2701 gatattcctg gagaacttgg agcatgaaga ctcttttgtg tatctatctg caattcaggg
     2761 ggttgcccta ctctcagatg tgtaccctga agaaatcttg gttgacctgt tggccagata
     2821 tgacagtagc aaagacaagc acaccccaga gaccagaatg aaagttgggg aggtcctgat
     2881 gcgaattgtc agagcactag gggacatggt ctcaaagtac cgggaacctt tgatccatac
     2941 cttcctgcgg ggagtgaaag acccagatgg tgcacacagg gccagcagtt tatccaacct
     3001 gggggagctg tgtcagcgcc tggacttcct gctgggcccc gtggttcatg aggtgacaat
     3061 ctgcctgact gctgtggcta aaacagacac tgacgtccaa gtgcgcagag ctgcagtcca
     3121 cgtggtcgtg ctgctgcttc gaggactcag ccagaaagca actgaggtgc tgagcgacgt
     3181 cctcaaggat ctctatcacc tgctgaagca cgtggtacgt ttggaacctg atgacgttgc
     3241 caagatacag gcccagctgg ccctggagga gctggatgag atcatgagga acttcctatt
     3301 cccaccccag aagctggaga agaagatcat ggtcctgcca tagacctggc tcacagaaca
     3361 cggaagaagg cagggggaag ccaagtggtc agagcagtgg ccacacgcct cccagcaggt
     3421 gtccccacca cctccttgct gcaggcctta aggtagcctt acggtgctgg tcacttggga
     3481 gttcagagct acctttctag aacatccatt tggtcactct tcatctggcc caaagcacgt
     3541 gcatgagaag ggtgacttcc acctaatgag tacactcgtc atcgtcctga gccattagag
     3601 atgtgtgtat aactgtggag cattttcttc cttccggctg gaggggctgc cccaccccca
     3661 ggccccatct tgctactctt tcagtgaggt gattttgcct gtgatgagaa gcaggtaaag
     3721 ctgtcatctg ggtgtgcagc tgagtggagg gctaagcatt gcttaaacat acaaacacaa
     3781 aagaataaag ttaccttggc gggaatgatc agccagtgtg aatcttccac tcccctgcct
     3841 cctctaaaga tgctgcttgt gcctgccatc ctagtcgggg gtggtgcaga gaaggtgcgt
     3901 ctggaaggct cactggccaa tctaagccaa caagagagcc ccccaccttt ctcaaaaaag
     3961 gggggggcgg cagtgccttc tgggaaaaag cacccaaagt tgtcctctgg cctacacaca
     4021 cacacacaca cacacatgca cagtgtgtgt gcagcttcac ccacatggac acacaggaaa
     4081 agggagaaac tgctgcctca gataagccac tctgttgctt acacttttat aagactaatt
     4141 tggtgttcac tgctcctcgg tgtcacagag ataagtatgg tactttgtca caggactcta
     4201 tctccactgt ctggggtgtc ctgacctaca ggcagcagaa ctcagactga cagtgcaagt
     4261 gactgtggtg ctgacattca gggctcctgc ctggtcagag gatgccagat tacacagcct
     4321 tctcagctca gccttcctca tccccagaaa ggtgtcagtc actgttacaa ggccggatat
     4381 caagcaaagg atcaagcaag gcagctgtct gtcgtgtcgt ggcgcacacc tttgatccca
     4441 gcactcagga gggagagggt ggatttctgc caaaactaca cagaaaaacc ctgtctcaaa
     4501 aaaattagaa caaaggtcct tgaatgtttt aaaagaatat ttctattcag ctagggtagc
     4561 aatattagtg tatatttttc aaatcaagaa tgtctataaa atcagggttg gagcttaaga
     4621 cgcggtttcc tagcctttgg aatacataga accgaaggct ggagagatgc tcaccggtta
     4681 agagtgcgca ctgttcttgc ggaggatgcc aggttggttc ccagcgcgca catgaagagc
     4741 tcacaagggc ctatgagtcc agctctgggg gactgacatc tctgggtctt gagaacagca
     4801 gcactcacat gtccataccc acacacagac atgtaattaa aaataattgt taagttatat
     4861 atgtatttgt aaaagatacg gcctgcttca gacatgcggg ttgagtctgt tatgcagttg
     4921 tccactgcat ttacatcagt gcgctctagt tttgaggatg ttcattgatg actttgaaga
     4981 tcttcaccac ctaaccacat atgctcctca gagccttagt ccctttatct ctgtgtataa
     5041 attgactcta agtttgaact acttaccaaa gcacttaaag tatttgattt tattgatttt
     5101 gatgtgctca atttgagaga gtaatttttt ttcttcctga cttcattatg aaatccaaag
     5161 ggaacattat ttagtgtaac ccttgtgggc atgaccagat tattaaggac tgtcaaataa
     5221 ctcttctaag tcaggcatgg tagtcaatgc ttataactcc agcactcacg aggcagagac
     5281 aggagggttc tagtgagttc agagtcagat gcaggctgca tagtgagttc taagacagct
     5341 tggatcacag tgtggaatgc tatctgaaaa aagtgaactc ctgggggctg aaggaagctg
     5401 tcactcagct ggtgtgatgc ttgcctaaca cacacacagc actggattca atcctcagta
     5461 catcaaaagt cagacgccat gctgtagacc tgtaattcca gcactttgga cataaaggca
     5521 aaaggatcat aagttcagaa ccatccttag ctccatagct aacctgaaca atagaagaca
     5581 ctgtctcagt tataattttt attataaatt tattcatgtg catattatgt ttctgaatga
     5641 aaagctcgaa ggaaagaaag caatgggata ggaaaagcac aaacataaaa ttttaaaggt
     5701 ccagaattct gcctggacct ggtgacacag acctgtaagc ccagctactg gggagtggag
     5761 acaggagggt gacgagctca aggcctgcct gggctgcagt gagttcatgg aaactctgaa
     5821 ggcctgtctg aaaagagaaa cggagagggc aggagtatcc ctacctctgt tggaggcagc
     5881 agcagtgccc agcctatatg aggccctaca ctcagtcccc agccctgaaa acaaacaaat
     5941 ggcaaaaggg ccgtcctctt cttccccttt tagtccttcc atcccacatc tgtcactgcc
     6001 aaccctgaga gcctgagttc aaatcccagg atccacgtga tcaaaggaaa ggcctgattc
     6061 cctcaggttg gcctctgact tccacacaca ccatggcaag agcacccctc cccagtaaat
     6121 gaaggtaatg aaacattttc tgttaaagtt gcaggaaaaa tgagtccatg aggatggtga
     6181 atggccctgg tgagaacttc tgggaattga ggtacagcag cctagcccca gggaactgtg
     6241 aaagtcttct gggagaggaa gggccgacca catagccata ggaagatctc agggaaaggg
     6301 aagagctggc acaaagcccc agaaagagag gcttgaggaa aagctggggt ccagacagag
     6361 taagaggaaa gctgtcctag ggcggggggt gcaggcagag attcattaaa caaaggaggc
     6421 agcacagacc gatttctgcc tgaagctgct tccttcagct tgtttctgga aagtgctgtg
     6481 aagctaatgt ggtacgtgtg gtaaaattgg gaataaatat aaccatgcac agtc
//
