LOCUS       XM_039103815            5261 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TAFA chemokine like family member 3
            (Tafa3), transcript variant X1, mRNA.
ACCESSION   XM_039103815
VERSION     XM_039103815.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103815.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5261
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5261
                     /gene="Tafa3"
                     /note="TAFA chemokine like family member 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 10 ESTs, 13 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     11 samples with support for all annotated introns"
                     /db_xref="GeneID:691123"
                     /db_xref="RGD:1587462"
     CDS             1608..2009
                     /gene="Tafa3"
                     /codon_start=1
                     /product="chemokine-like protein TAFA-3"
                     /protein_id="XP_038959743.1"
                     /db_xref="GeneID:691123"
                     /db_xref="RGD:1587462"
                     /translation="MAERSTSNWSPGSWVLALCLAWLWTRLASASLQPPTSTVLVKQG
                     TCEVIAAHRCCNRNRIEERSQTVKCSCLSGQVAGTTRAKPSCVDASIVLQKWWCQMEP
                     CLLGEECKVLPDLSGWSCSRGHKVKTTKVTR"
ORIGIN      
        1 ccctgccagg ccagagtgtc ccacaccagg ttagacacca gattaggtcc tggaataacc
       61 cctaccttag actctcacac acacacatcc tctcctgctt gctggccaag ctgaaaaagg
      121 tcacagctgc ctgggctcca agccagaggg aagaggagaa ggcagggcca gcaagaagta
      181 ctgtctggtg gcagaatgta cagcctcata gaaaggccgg caacagtaac tgcctgcctc
      241 cgttcctcca tccttggcaa aggaggcttt ctggaaggtg gtgctgaggg tgtgtgacca
      301 gacagggaca ttaagtttta ctcccctgcc actcaaaatt ctacattccc acctccaatc
      361 tcaaccagct cagacagtga ttcatgggca cgttcacctt catgggcaca ttcaccctca
      421 tcctaaaacg acctagtgaa agttccagtc tttcttagag tggggaagtg ctccggccca
      481 aataaggtct gtagacccat ccggactggg caggaacctc tcagctacaa acccctcagt
      541 gaccccacct ccctagtggc ttagcttggc tttccccaaa gatgattttt aaatatacag
      601 gttctgagag cacgctgcct cttgggctgt gccctaccag taccaatctg tctacagacc
      661 cacaaccaaa gggaaccgtc gcgctctacg ggcggacccc tcccccgccc gggaagccag
      721 gccttctggt gtcgcgggct atttctgggt atggaggggg aggggaccgg taagaaggac
      781 agggaactgg ggcgctgggg ccaggaagcg ggtgagcgag tctttccact cgcgatctcc
      841 ctggcaaacc ttctcaaact tcccctccct tagcctgtga acagcgggcc gcgactggga
      901 acccgccaac tcatcctcgg cggtgttccc tgcgccctcc ctggggagag aactgtcttg
      961 agccggcgag ggggaggatg ggaactgtcc acgaaagcag agtcggtggg cttctgttcc
     1021 tgactcgccc tgtgccacaa gaggccgctg cggaccagct gtgcctaggt tccctcagag
     1081 cgcccccatg ctgtctgatg tctggaagaa ggcggcggtg cccgcaaggg ctggagccgc
     1141 aggaacgact cccagtgtag cgactgcgcg ctccacaacc tgcagacgaa aagctcggga
     1201 ggacccagcc tggcaccgca gaactgctgc tttctggccc agagcatcca ggtgctccaa
     1261 gtcggggact ccagcttagc cagagcccct gctctccttg ggcgcaacaa cttagtgacg
     1321 atctatcgca ggaagagctc gaaaccagac aacatctaag ctggccactc ccgcggagat
     1381 cccgcttttg ggagtctaga tgccaagctc agaagcagcg aggacctcag gccagacggt
     1441 tgaagcaggg ccactgatgt ggaacaggtg gaataaggcc agcaggtgaa gagacagagg
     1501 cctaaagacc cagaagcagc tcccccttcc tgttccttga tccttcgcta tcagtgatca
     1561 tatcctacag tgacattgtg cctgaccaca gctgcctgga gataagaatg gctgagaggt
     1621 ccaccagcaa ctggagccca ggcagctggg tgctagcact gtgcctagcc tggctgtgga
     1681 cacgtctggc ctctgcttcc ttgcagcctc caacatccac agtcctagtg aagcagggca
     1741 cctgtgaggt gattgccgca catcgctgct gtaaccgcaa ccgtatcgag gagcgctccc
     1801 aaacggtcaa atgctcctgc ctttctggcc aggtggctgg cacaacaaga gcaaagccct
     1861 cctgtgtgga cgcgtccatc gtcctgcaga agtggtggtg tcagatggag ccctgcttgc
     1921 tgggggagga gtgtaaggtg ctcccggacc tgtcagggtg gagctgcagc cgaggacaca
     1981 aggtcaaaac caccaaggtc acacggtaac tctcggaggt caaggctgag gctttgactc
     2041 agcttgggac tgaagaatgg cctctggtca ccagacagca gataggagga ctcactcacc
     2101 cggacacgtg tccttgtcaa atgtaacata aatctgtcag ggccctgtta gccacactgt
     2161 taggcagaaa tgcttgatct tcagccacat acttagagac ctctgctctc ctatgaacaa
     2221 aggccaacac acaaacctac ccttaaggaa aaccttgtca agttagggag tggatgacag
     2281 atactttaaa gtgtctggtg ccatggtttc tgagtcactt gcagtgggta cagtgcgggt
     2341 ggggtgggtg gatgaaattc tcacagatct tcagccatcc cccgatcgct ggacacaaag
     2401 tcatgaggtc acaccagtat cttcccatcc tggccttccc agcaaacctg caccccagcc
     2461 agatgctaag atgtgagagg aaaacactgt ctcctgatgc cgagcccatg ggatctcttt
     2521 tggacagtgc cagaaagtag aggtgaggag ctcttcagct cagctctgcc gaggcacggt
     2581 ggcactcaca gcctttgctg tctatgggat ggacaggacc tcagtcagag tcaaccccta
     2641 cctgaacttc aggcgtttgg ttgcctgttt taatggataa gaaaacctag acacagaagg
     2701 atgagatggc ttgcccaaga tctcacagct tgggcttcca aaacatgact gttgagattc
     2761 cagcccaggc cttccatgga cattttatct aaacagtgag accagcaaac actgtctgca
     2821 gcaatggcag caggatggca gcaatgtgat ctttgggaga tgggactttg accacttcag
     2881 tcccccaaat ccaaacaggc cacatgacag cccagaggga actcagccca gtggcagctg
     2941 aagcagtgtg agcaggtgcc cacctctggc tgtctgcttc ccggagcttc agccatcccc
     3001 ctacataggt acctgtcaga gggcagaggg gcagtccaga ggacagccca accttgaagg
     3061 tctccacaat cgggctggcc tcctggatgg cttgggggtg gcatgctggc ttgctcttat
     3121 tcccaaggcc tcaagaagtg gtatatgtta gagaccagcc tggatgatgg tccctgagaa
     3181 ggcaaatcag tgatagtttg cactggagtc tcggtgcccc atctctgcct gtttctctag
     3241 gcatttggct aagactctga tgtcacccca cctcagggca tgcttttggt tttgttaaat
     3301 gagatgacag tgatgttatc tttcgaagtc aggcctctgt cagtctgctt gtagcaaggt
     3361 cacaggccag ggtcaccatg gagaggtcca cggctgtcat ggactccttc acactgaaga
     3421 gtggaggccg gaggatatgt tacgtctccg tgacatattc tttgttgtgt tcttttgttc
     3481 cattttgttt ttaaaaacat tacagaattg tcaatgtcat ctttagctct aggggtggag
     3541 ggaacacatt gtggcccatt tcaggtgttt gtcacccttc ccaggggaca ttgaaggcct
     3601 gggatggcct cccagcctcc tggctcaccc ctctgtacca aggaaacctg agcgcagggc
     3661 tgggcctggg tttgttttcc tcctaatgct cagagagaga tgggtgagtg aattatttag
     3721 gttacagctt cagcagagcc agacaatgaa aaagtgtgct ttcctggagg cccgaaggta
     3781 ggctctgtag gtgacagaga gctcagtggc agaacactga aggaaaggtg gactctccat
     3841 tcactcgctc ctggactgtc accccagtgt cagcacccct gctccaccct ggcttgctat
     3901 ccacatgaac tgggttagaa tggagagtat ggagatgggg ctctcctgtg agctgccagc
     3961 ctcctccagc cctacctgcc tcagtgtcct gattctgtac cttctctgac ccccagtctc
     4021 cctccctccc tccctagcca ggcattcact gggtgaactc tgaaccgagg gagcatgtgt
     4081 acattgccag gaaagtacca cgtaaaaagc tctggcaaag aaaagctcca gacccccctg
     4141 cccccaactc cagctcccca aaattctgta tccaacggag tccaaacttg tgtaggtttt
     4201 gtagctatgc aaagaacatt ctagaaataa atggagtttt tttggagcac aggggttcct
     4261 gtagttgtct gtcttccttc tccctccttg gcaagagcat ctcagatcct ctgacgtctg
     4321 ctgggacccc aacccttcag ctatgcagac cttaggaaag ctggcaacta ttaaatcata
     4381 tgactgattt ctgctgacct cctggcagta tcactggagt ctgtgagtga cgtcctgatt
     4441 aagaacccaa ggctacagct ccttaaaatc agagttatag gattgcaaag gggtttagaa
     4501 gccagttagc caaactctct gatttgccag cctaggagag ggtagctcaa aaaggttaaa
     4561 taatttgccc aaagttgcac agcctgttgg tggcatgtcc ttgctcagtg acgcagcaca
     4621 cagttctttc cattattgtc catccctttg tactccagag cagatgagaa cttggaaggg
     4681 gaacagggtt tttaaccatg actgtgagtc tcattctaga cttgcccaac actgtgagag
     4741 caaggggcag agggaagaaa aacaggaaac acacagtggt cacagacaca taggaaggaa
     4801 gaaggggagg ggtggacatc accacttcag aatgtcaaac cacacagcaa aactgaacaa
     4861 ggctgatgcc tcatgaagga gaactggtct ctgtcctctc tggaggaggt gacacagagc
     4921 tttgccagtc cttggcaaac cggcatggtg gttcatgccc atagcctagg tactcaggaa
     4981 gcaagcagga ggatggcaag atggaggcca gtttcgacct aacagagacc ctgtcaaaag
     5041 aggaaaaaca acaacaacaa caacaacaac aacaacaaca acaacaacaa caacaacaga
     5101 aaagaatttg aaaccttgag gaaccttgaa gctgccttga taaccccagg ttctttatgt
     5161 cctatggggg ggattgcaaa ctaaagcaca tggggttttt gtttgtttgt tttttgttgt
     5221 tgttttgggg tttttttcaa ataaagtttt attgaaacat g
//
