LOCUS       XM_039080145            4116 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TAFA chemokine like family member 2
            (Tafa2), transcript variant X1, mRNA.
ACCESSION   XM_039080145
VERSION     XM_039080145.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4116
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4116
                     /gene="Tafa2"
                     /note="TAFA chemokine like family member 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 13 ESTs, 7 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     16 samples with support for all annotated introns"
                     /db_xref="GeneID:680647"
                     /db_xref="RGD:1589429"
     CDS             1126..1617
                     /gene="Tafa2"
                     /codon_start=1
                     /product="chemokine-like protein TAFA-2 isoform X1"
                     /protein_id="XP_038936073.1"
                     /db_xref="GeneID:680647"
                     /db_xref="RGD:1589429"
                     /translation="MFRGHFLLQKKDLISDDRLSSAEEKRDPEKGRMNKRYLQKATQG
                     KLLIIIFIVTLWGKAVSSANHHKAHHVRTGTCEVVALHRCCNKNKIEERSQTVKCSCF
                     PGQVAGTTRAAPSCVDASIVEQKWWCHMQPCLEGEECKVLPDRKGWSCSSGNKVKTTR
                     ANV"
ORIGIN      
        1 actgctgagt ccatttagtg ttgattgtat gtaatttttt taggactgat gacttggata
       61 accatttggg agttcatcac tctgaaaaac taacttccct cagcagttgt cattgtcccc
      121 atcaatgatg gcatgtcaac tgctcttatc cctattcagg ccttgtttta gcatcggtat
      181 tcatggcata gtgtatccct tagtctacat gcatgaagct tctttttgca gcagatagag
      241 agcatttctg aaagccacac ccggggccaa cgaggagaat aactggcaag agtagctcag
      301 actcactggg cacatcggca gccaccgtta cctccaaggc tcaggggaat atcttggaag
      361 agaaggcaaa atggttttaa gcaccagaga gccagggagt cttctgtgac tgtgtgccaa
      421 cgaagctaca cccacgaagt gttaattcct cttaatgaat aatctcattt ctgaaaacaa
      481 ttgatgagcc tttgattggg gtgggggcct ggtgtacagt ctcacttcca tgcagatgcg
      541 tggcaggtgg agaaaacagc caaaggtacc caaggtgaaa atgaagaggg tcactggtag
      601 cttgtccatt tgaaagagaa aactattacc ttgctacaaa tgctgatgga gagaaagata
      661 gcaccggaga tccagaaagg tggcctgtgg agggaaatgc gtttggaact tatgaccggc
      721 ttgctgtgta gcctcttaga agaggactcc atggctaact acagatgtgt aggccttttt
      781 atttttttca tatgcacgct tgtttatgca gtgtgtatgt gtgtaggcat gtttgcctgt
      841 gtgggcacgt gagtatgtat gttggtacat gcacatgtgt gtggaagcct cactggtcac
      901 tttctagctt acttactgag acaaggactc ttgttggact ctgcttacag tttgagctac
      961 tacttacatg gtggaactgc aggcaaagcc actgcttcat cactaggcca aatgtgcttc
     1021 cgtgtcagaa gactagatgt ccgtggagat ggcatagact tgctctgatg tttagaggcc
     1081 aggaaactga aaaggaatca caaggaagag aagtcaagga aaaccatgtt ccgaggtcac
     1141 ttcctgttac aaaagaagga tctgatcagt gatgatagac tctcttcagc agaggagaag
     1201 agagaccccg agaaaggcag gatgaataag agatacttac agaaagcaac acaagggaag
     1261 cttctgatca ttatttttat agtgaccttg tgggggaaag ctgtttccag cgccaaccat
     1321 cacaaagctc accatgttag aactgggact tgcgaggtgg tggcgctgca cagatgctgt
     1381 aataagaaca agatagaaga acggtcccaa acggtcaagt gctcctgctt ccctgggcag
     1441 gtggcaggca ctacccgagc tgccccatct tgtgtggatg catccatagt ggaacaaaaa
     1501 tggtggtgtc atatgcagcc atgtctggag ggagaggaat gtaaagtcct tccagatcgc
     1561 aaaggatgga gctgttcctc tggaaacaaa gtaaaaacaa ctagggcaaa cgtgtaaaac
     1621 tcttcacgtt ggaatggcga aaatagaaaa aggaggtttc tgcagtgcct ggtgacaatt
     1681 tttgattttc cacattcaaa attattctgg ctccacgctg gagcagtggt tatggcgaat
     1741 cctagtgttg gtcggattct gaggaaggga cagaagtgtc cttgagaagt agagatccca
     1801 aacaactcca gaaatgagcg cctgtctcct catttctcac agagcagcag gtaactcatt
     1861 aacgactcct aaatcaagta atcctcaagg ctggtttcac ggagacatca gaatagaaac
     1921 tggactccta cagtgacctg gaagattttt ataactctcc gaagagacat ttaaaaccca
     1981 tttccaagga attctatggc ttgtcctcta attcctactg aaactaagac tttaaagaag
     2041 tctgaagtga actttgggtg ctgaagactt catcagctgt gaactgtgct tggctcatga
     2101 tgtttctgag ggaagcggaa ctctgctctc atggagccgg gatagggttg gttttccggg
     2161 ctgacaccag agactgtcac ctgtaagatt ttctggcttc agctatgact gctcttgtgt
     2221 ctgaagctgt ctcccaagca cactgtcccg tcatggatgt gctcctggct cctttgttcc
     2281 ttgtctaata ggactgtgca cagctttgag gatgttccct ttgcaaactc ttccggcatg
     2341 gcatagacag agacaatttt attggtattc taaccttgaa accctgaaag cctacatgtt
     2401 ttaacatctt gcttttgcct ctgtaaaagg aatagaagta tttatccatt gataacgata
     2461 atcattggca aatcacagtg atctgactac atccctcata aaagaatgtg taggcgagct
     2521 ggcacatttc cccaaggcta acgcggactg cagctctctg acagttaaac agatagcagt
     2581 taggactggg ttccaattcc cattacacag tattctgtgc ctccagtgca cccttccttc
     2641 cagttttttt taaagtgtat tttctttttt tttatatttc cttttacttt ccttcacaga
     2701 aatcatcaat gtacagtcaa cttagcaggt agcttttgat ttaaaaaaaa taaaataaaa
     2761 caggccaggg atgcatgtgc ttctctaatt tctcatcact tacatttctt ctagcatttt
     2821 cttaaactat tctttctgtc tcattttaat atcatctctt gctcgattcc aatgactgct
     2881 tgaatgctta ttatttgttc agtctgtgga tagaaaaaaa atctgttgat tttccttgac
     2941 cacaaaggtc taaatatgtg cttatggttg ttctattcaa acatttcttg gccagtattt
     3001 tgtccatatt ttcacttgtg attttagttc ttcaggagtt ttcttacaaa tatttaaagg
     3061 ccttaaacgt tgatttacct ttttctaagt tattacagaa tgtataattt tgtacggcat
     3121 ttattttgtt tcacttgtga agcgggggaa gggaacagtg gttatggcca ccctataata
     3181 atagtacaat gtaaacctat agtttgaaga aacataaagg caagggtttt ttccatgtct
     3241 tgtttatttt aacttgatca aaatgcttca cagatcatgc cattaggtgg tccgtcattt
     3301 tagtaaaaga gtgaagctgt ttgggacttc ttgtatttct agaactcatt ggcaaagcca
     3361 gttaaccttg tgttggtttc taggatggag gttcacatat tctagagacg aacttgtatc
     3421 tgttagtctg taacgatact caaaaagagt cacacattaa ctagaaccct ttagtaggaa
     3481 gaagagctaa aattgttaaa aagtgttaaa aattaaatcg gaaaaaccac acttttaata
     3541 ctgagcaaaa gtcaactgcc tcatgaatat gtggaatgca gcgattccca cctcactttt
     3601 aagtgcttaa aacctgttgg gtggtccaag tctacacaga gtcaaaatga gaggagtaat
     3661 gtttgtgctg cactttctct gtcaaacgaa gcgaagcacc actacttcct ctggtacaaa
     3721 atgaaaaact atcatttggg atattaagaa tttatcctag gtttgtttga aattatgaat
     3781 catgcttctc attttgaaaa ctatgttatt taaaccaacg ctggaatttc tgtattatat
     3841 acaagtgtaa tacatgtcta tcgatagaaa aaaataaatg gaatttcaaa tatatgatct
     3901 agaatattcc cggtagatta atgttgtgac tattcggaaa aaaataaata aaattggaat
     3961 ataaagtgga ctcactttca caagtaaaat ttggaaaatc tggtttcttg tatcgtattt
     4021 taaaagtacc ctagttagta agcaatacaa catcgaattt agatggaggc gacaaattct
     4081 tcaacctttt ttaataaagt tctgcgttaa actttc
//
