LOCUS       XM_039109030            3734 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TAFA chemokine like family member 1
            (Tafa1), transcript variant X1, mRNA.
ACCESSION   XM_039109030
VERSION     XM_039109030.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109030.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3734
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3734
                     /gene="Tafa1"
                     /note="TAFA chemokine like family member 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 49 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:500266"
                     /db_xref="RGD:1563030"
     CDS             455..856
                     /gene="Tafa1"
                     /codon_start=1
                     /product="chemokine-like protein TAFA-1 isoform X1"
                     /protein_id="XP_038964958.1"
                     /db_xref="GeneID:500266"
                     /db_xref="RGD:1563030"
                     /translation="MTMVSAMSWVLYLWISACAMLLCHGSLQHTFQQHHLHRPEGGTC
                     EVIAAHRCCNKNRIEERSQTVKCSCLPGKVAGTTRNRPSCVDASIVIGKWWCEMEPCL
                     EGEECKTLPDNSGWMCATGNKIKTTRIHPRT"
ORIGIN      
        1 tcccgctact tacggaggta tagcagccct gctcctacat ttcgctgcct aactctgtcc
       61 tgaatgcact ggagtaggga tggtctgtcc gtggctataa actgcttctc ttcaggaaac
      121 tacattagct caccatcact tcaaaggtct cgtcagacag aggtgacgcc aggggatgat
      181 ttaaaggtga acatgacaag gtttccaccc ctcaaacctt ggttcctttt ctgacaatac
      241 agtgaacgaa cccagcgtct tcacaactgt ggaaacagga ctggaagagg gaagcgtgct
      301 ttttttttcc ttcaattcct aataaagaac tgctgggaag cattctcttt gaaaaaaaat
      361 ctcagaactg tggcacagat ggattttaaa aagtgttagc tctttccaat gaacactagg
      421 agagtgtcct gctcttggct ggatttttca gagaatgaca atggtctctg caatgtcctg
      481 ggtcctgtac ttgtggataa gtgcttgtgc gatgctgctt tgccatgggt cactccaaca
      541 caccttccag cagcaccacc tgcacaggcc agaaggaggg acctgtgaag tgatagcggc
      601 ccacaggtgt tgcaacaaga accgcattga ggagcggtca caaacagtga agtgttcctg
      661 tctacctggg aaagtggctg ggacaacaag aaaccgacct tcctgtgttg atgcctccat
      721 agtgattggg aaatggtggt gtgagatgga accctgccta gaaggagaag aatgtaagac
      781 actccctgac aactctggat ggatgtgtgc tacaggcaac aagatcaaga ccacacgaat
      841 tcacccaaga acctaacaga agcatttgtt atataaatag caaaaaagaa caacctgtgg
      901 aaaatgcatt gtgaggattt aaaacatctt acacacttgc aagccaaatg gatctcttat
      961 ttgcaccttg gttaccagat aatcacagtg cacttactct gtgaaacaaa gcatcccaaa
     1021 agaagaagac tcgggatttt ctggcaacgt catggaaaat ggctttaaaa aaaaaaagag
     1081 tttttttctg tgaaatttgg gggatcatga agaacgatca accgtcttct aattcggaac
     1141 taccattact ttgtaccatt tgaaatatat gtgtatatat ataatatttt gaaatattat
     1201 atattctctt caagaaatga acagtaccac aatgtgaggt ggctggtgta cccctttcag
     1261 ttttggatgt ttggtcggtt ttgtttcgtt tgccattcct tttttctctc agtgaggaag
     1321 atacatgccc gtgtgagaat ccaacatggc actctccctg gaaggccagc tgcaagccga
     1381 ctcctggaat cagaggcatc ctaaaagtac tgagtcaaga gcttccccct gtttctacct
     1441 ggtgacccaa ggaagctcct cgtcctgatt tattgctttc tatcttgtgc aatattagca
     1501 tgcaagcttg gcttacataa ccatacttta tactcaattg atatataata accgttctaa
     1561 cctcttccag gaaaatattt ttagaactac tagcttttcc acagataagc aaatgaggat
     1621 tcttgaggga gctgctccac cgcgctatta agactctggc aggatggtag gatgtagatc
     1681 cctatattaa taagtcctgt aaatacagtg tcttagggct ttgtatagct gtcctagact
     1741 gcagaagtgt cctctgatta aatccaaagt ctgccattgt taactacata gtgctgtagc
     1801 aacaagtttt atcatggcgc ctctttctgt gtttgatttg ctttttccta gagtattcac
     1861 atctcctctc atgagatagg aaagctatga aagcaattag gtttcacaat gatctatgtg
     1921 accaagtgtt ggacagccct attaaagtgg taaatgactt ctttcttaac ccacttgtcc
     1981 tctttgtctg ccatttagtt tttatagact ctcttctaac tagaccaaga gatcacgaga
     2041 ctctatggag gccattattt ccaacaataa tattttgaaa cttagaaact cattaatatg
     2101 attgtagtga aatatccaat taaaatttct gggattcctg ataatatata caggacacac
     2161 acacacacac acacacacac acacacacac acacacacac acacacacac acacacacac
     2221 accagcaaca acaataacaa taacaaaaac taaaaacatt acccctgtct tttttgagtt
     2281 actgaactga gctcaaaagt aaacgtctac ttaatgtcaa attttcctgg ggaaaatttt
     2341 aatgggcttt acactcccaa gtcctctcac aacctcaggg tttttttctc cccaaattat
     2401 tctctggcat ctgtgtttta gagcctctta aactcgcaac actatagccc ctgagtctgg
     2461 actttttagt ataaaaaact caagttaaac tcaagatttc tctcttactc taccctgaaa
     2521 gcctgaaggt taattggatg tgtgaacttc taaccaaaaa atttgattct gtatctctaa
     2581 ggctggtaaa aagcatcaag agatagaaat agaatcccta ctgtaaaatt gagacctcca
     2641 aaagctttgg tgaatatttg ctaaaagata acgtaaaatc tgtaccagcc tccttgtgtg
     2701 gcggcaagtg ataggtagcc atcacttgag atcccagcac ttgaaacatg gaggtaggaa
     2761 gattacaagt tcaaagtcag cctaggatac aaagccagat ccctgcccca aaacaaagaa
     2821 aaccatttgt gacagcactc atttcttagt tttatagcat caattcaagt gacaagcaag
     2881 gacgtaaaaa caacctttca tatgtcagct tcagattaaa attaaaaaca tgaaaactaa
     2941 gaattatata tttgaggaaa aaaactaaaa tagaaatatt tgccacagaa tttggtagag
     3001 cccttagtat agccaaaaat ggtatagaat caaatacaag agagcctggt ttaaaacaaa
     3061 catgagtaag taaatcggga ttgattccag catgggggag cttcactttg ctcaataggg
     3121 aagtgtaatc actcaaaatg ggagactaca aaaatttagt tctaggtgaa tttaccataa
     3181 ccacattgcc atatctccag cttgggggag aaatgcagaa atctagagtt ttgcattaaa
     3241 cttcctaaca ttcctaataa atgaggcaac ttcattaaaa tgactgcaaa agttattatt
     3301 gggtcacgtt ctctgaaggg tggacttagc tatgacattt gtgtatcctg gagtcttcta
     3361 gctttgatcc cagaggaagg cccaatgaaa agagaagaaa caagactcct ctattgtgaa
     3421 aatccttact ctggaagaca attctgctaa cgcacagtat atgagggtca tgtttttctg
     3481 ccctggaacc agaagctgta actcaatgta agaactagcc agagggctac atctgttagc
     3541 tcacccacat ccatgatttt atgcagtagc atcctttgaa gacacctgag aaagaaacca
     3601 ggaaagcaga ccatatcaga atcaggcagc tctccaataa gacagtgcaa atatttgtaa
     3661 atgtcagatt caatttggat tcatccaagt tacttacaca aatgtatgaa ccattaaatt
     3721 gtgtttaaat ttaa
//
