LOCUS       NM_184048               1224 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus TATA-box binding protein associated factor 9
            (Taf9), transcript variant 2, mRNA.
ACCESSION   NM_184048
VERSION     NM_184048.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1224)
  AUTHORS   Malkowska,M., Kokoszynska,K., Rychlewski,L. and Wyrwicz,L.
  TITLE     Structural bioinformatics of the general transcription factor TFIID
  JOURNAL   Biochimie 95 (4), 680-691 (2013)
   PUBMED   23146842
  REMARK    Review article
REFERENCE   2  (bases 1 to 1224)
  AUTHORS   Spedale,G., Timmers,H.T. and Pijnappel,W.W.
  TITLE     ATAC-king the complexity of SAGA during evolution
  JOURNAL   Genes Dev 26 (6), 527-541 (2012)
   PUBMED   22426530
  REMARK    Review article
REFERENCE   3  (bases 1 to 1224)
  AUTHORS   Sengupta,T., Cohet,N., Morle,F. and Bieker,J.J.
  TITLE     Distinct modes of gene regulation by a cell-specific
            transcriptional activator
  JOURNAL   Proc Natl Acad Sci U S A 106 (11), 4213-4218 (2009)
   PUBMED   19251649
REFERENCE   4  (bases 1 to 1224)
  AUTHORS   Tatarakis,A., Margaritis,T., Martinez-Jimenez,C.P., Kouskouti,A.,
            Mohan,W.S. 2nd, Haroniti,A., Kafetzopoulos,D., Tora,L. and
            Talianidis,I.
  TITLE     Dominant and redundant functions of TFIID involved in the
            regulation of hepatic genes
  JOURNAL   Mol Cell 31 (4), 531-543 (2008)
   PUBMED   18722179
REFERENCE   5  (bases 1 to 1224)
  AUTHORS   McKeegan,K.S., Debieux,C.M., Boulon,S., Bertrand,E. and
            Watkins,N.J.
  TITLE     A dynamic scaffold of pre-snoRNP factors facilitates human box C/D
            snoRNP assembly
  JOURNAL   Mol Cell Biol 27 (19), 6782-6793 (2007)
   PUBMED   17636026
REFERENCE   6  (bases 1 to 1224)
  AUTHORS   Martinez,E., Palhan,V.B., Tjernberg,A., Lymar,E.S., Gamper,A.M.,
            Kundu,T.K., Chait,B.T. and Roeder,R.G.
  TITLE     Human STAGA complex is a chromatin-acetylating transcription
            coactivator that interacts with pre-mRNA splicing and DNA
            damage-binding factors in vivo
  JOURNAL   Mol Cell Biol 21 (20), 6782-6795 (2001)
   PUBMED   11564863
REFERENCE   7  (bases 1 to 1224)
  AUTHORS   Buschmann,T., Lin,Y., Aithmitti,N., Fuchs,S.Y., Lu,H.,
            Resnick-Silverman,L., Manfredi,J.J., Ronai,Z. and Wu,X.
  TITLE     Stabilization and activation of p53 by the coactivator protein
            TAFII31
  JOURNAL   J Biol Chem 276 (17), 13852-13857 (2001)
   PUBMED   11278372
REFERENCE   8  (bases 1 to 1224)
  AUTHORS   Ogryzko,V.V., Kotani,T., Zhang,X., Schiltz,R.L., Howard,T.,
            Yang,X.J., Howard,B.H., Qin,J. and Nakatani,Y.
  TITLE     Histone-like TAFs within the PCAF histone acetylase complex
  JOURNAL   Cell 94 (1), 35-44 (1998)
   PUBMED   9674425
REFERENCE   9  (bases 1 to 1224)
  AUTHORS   Fontes,J.D., Jiang,B. and Peterlin,B.M.
  TITLE     The class II trans-activator CIITA interacts with the
            TBP-associated factor TAFII32
  JOURNAL   Nucleic Acids Res 25 (12), 2522-2528 (1997)
   PUBMED   9171108
REFERENCE   10 (bases 1 to 1224)
  AUTHORS   Aoki,T., Koike,T., Nakano,T., Shibahara,K., Nishimura,H.,
            Kikuchi,H. and Honjo,T.
  TITLE     Rat TAFII31 gene is induced upon programmed cell death in
            differentiated PC12 cells deprived of NGF
  JOURNAL   Biochem Biophys Res Commun 234 (1), 230-234 (1997)
   PUBMED   9168994
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB743840.1 and BC091109.1.
            
            On Jun 29, 2005 this sequence version replaced NM_184048.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 3. Both variants 2 and 3 encode the same protein.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ213120.1, FQ215462.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-227               CB743840.1         191-417
            228-1224            BC091109.1         217-1213
FEATURES             Location/Qualifiers
     source          1..1224
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q12"
     gene            1..1224
                     /gene="Taf9"
                     /gene_synonym="CINAP; TAFII31; TAFII32"
                     /note="TATA-box binding protein associated factor 9"
                     /db_xref="GeneID:373541"
                     /db_xref="RGD:727861"
     exon            1..79
                     /gene="Taf9"
                     /gene_synonym="CINAP; TAFII31; TAFII32"
                     /inference="alignment:Splign:2.1.0"
     exon            80..172
                     /gene="Taf9"
                     /gene_synonym="CINAP; TAFII31; TAFII32"
                     /inference="alignment:Splign:2.1.0"
     exon            173..1200
                     /gene="Taf9"
                     /gene_synonym="CINAP; TAFII31; TAFII32"
                     /inference="alignment:Splign:2.1.0"
     CDS             190..984
                     /gene="Taf9"
                     /gene_synonym="CINAP; TAFII31; TAFII32"
                     /EC_number="2.7.4.3"
                     /note="TAF9 RNA polymerase II, TATA box binding
                     protein-associated factor; RNA polymerase II
                     TBP-associated factor subunit G; transcription initiation
                     factor TFIID 31 kDa subunit; transcription initiation
                     factor TFIID 32 kDa subunit; TAF9 RNA polymerase II, TATA
                     box binding protein (TBP)-associated factor"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit 9"
                     /protein_id="NP_908937.2"
                     /db_xref="GeneID:373541"
                     /db_xref="RGD:727861"
                     /translation="MESGKMASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAF
                     RYVTTILDDAKIYSSHAKKPTVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQT
                     PLPLIKPYSGPRLPPDRYCLTAPNYRLKSLQKKAPTPAGRITVPRLSVGSVSSRPSTP
                     TLGTPTPQAMSVSTKVGTPMSLTGQRFTVQMPASQSPAVKASIPATPAVQNVLINPSL
                     IGSKNILITTNMVSQNTANESANALKRKREEEDDDDDDDDDDYDNL"
ORIGIN      
        1 ctccctggag agcgcgtgag ccgaagcgct ggctgcgtgt gaaggagtac tatgaagctt
       61 ccgaacatcc tgctcaccgg tacaccaggg gttggaaaaa ccacactagg caaagaactt
      121 gcatcaagat caggcctgaa gtacgttaat gtgggagatc tagctcggga agtctgatca
      181 ccggatatca tggagtctgg caagatggcg tctcccaaga gcatgccgaa agacgcacag
      241 atgatggcac aaatcctgaa ggatatgggg attacagagt atgagccaag agttataaat
      301 cagatgctgg agtttgcctt ccgatatgtg accacaattc tagatgatgc taaaatttat
      361 tcaagccatg ctaagaaacc tactgttgat gcagatgatg tccgattggc aatccagtgc
      421 cgtgctgacc agtctttcac ttctcctccc ccgagagatt ttttattaga tattgcaagg
      481 caaagaaatc aaaccccttt gccattgatc aagccatatt caggtcctag attgccacct
      541 gatagatact gcttaactgc tccaaactat aggcttaagt ctttacaaaa aaaggcacct
      601 actcctgcag gaagaataac ggttccaagg ttaagtgttg gttcagtttc tagtagacct
      661 agtactccca cactaggcac accaactcca caagccatgt ctgtgtcaac taaagtaggc
      721 actccaatgt ccctcacagg gcagaggttt acagtacaga tgcctgcttc tcagtcccct
      781 gctgtaaaag cttccattcc tgcaacacca gcagttcaga atgttcttat taatccatca
      841 ttaattgggt ccaaaaacat tcttattact actaatatgg tgtcacaaaa tacagccaat
      901 gagtcggcaa acgcactcaa aagaaaacgt gaagaagaag atgatgacga tgatgatgat
      961 gatgatgact atgataattt gtaatctagc cttgtcgcct gtaactattc ttggtcttgg
     1021 atccattgta ctgaaattga aaaagcatgt tagctgtttt aaagctgtac tttagaaagt
     1081 ggtatttaat acgtacactt actatacttt tggattgaaa tgttcagttt tactagaact
     1141 agtaatggtt tttcatcgac ctttatgcat aaaaaataaa attgtcattt atcagtttga
     1201 aaaaaaaaaa aaaaaaaaaa aaaa
//
