LOCUS       NM_001135877            1867 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus TATA-box binding protein associated factor 7-like
            (Taf7l), mRNA.
ACCESSION   NM_001135877 XM_343816
VERSION     NM_001135877.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1867)
  AUTHORS   Moreno-Irusta,A., Dominguez,E.M., Iqbal,K., Zhang,X., Wang,N. and
            Soares,M.J.
  TITLE     TAF7L regulates early stages of male germ cell development in the
            rat
  JOURNAL   FASEB J 38 (1), e23376 (2024)
   PUBMED   38112167
  REMARK    GeneRIF: TAF7L regulates early stages of male germ cell development
            in the rat.
REFERENCE   2  (bases 1 to 1867)
  AUTHORS   Cheng,Y., Buffone,M.G., Kouadio,M., Goodheart,M., Page,D.C.,
            Gerton,G.L., Davidson,I. and Wang,P.J.
  TITLE     Abnormal sperm in mice lacking the Taf7l gene
  JOURNAL   Mol Cell Biol 27 (7), 2582-2589 (2007)
   PUBMED   17242199
REFERENCE   3  (bases 1 to 1867)
  AUTHORS   Catena,R., Argentini,M., Martianov,I., Parello,C., Brancorsini,S.,
            Parvinen,M., Sassone-Corsi,P. and Davidson,I.
  TITLE     Proteolytic cleavage of ALF into alpha- and beta-subunits that form
            homologous and heterologous complexes with somatic TFIIA and TRF2
            in male germ cells
  JOURNAL   FEBS Lett 579 (16), 3401-3410 (2005)
   PUBMED   15927180
REFERENCE   4  (bases 1 to 1867)
  AUTHORS   Pointud,J.C., Mengus,G., Brancorsini,S., Monaco,L., Parvinen,M.,
            Sassone-Corsi,P. and Davidson,I.
  TITLE     The intracellular localisation of TAF7L, a paralogue of
            transcription factor TFIID subunit TAF7, is developmentally
            regulated during male germ-cell differentiation
  JOURNAL   J Cell Sci 116 (Pt 9), 1847-1858 (2003)
   PUBMED   12665565
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Oct 16, 2008 this sequence version replaced XM_343816.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760383 [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-334               JAXUCZ010000021.1  101967952-101968285 c
            335-403             JAXUCZ010000021.1  101963911-101963979 c
            404-537             JAXUCZ010000021.1  101961737-101961870 c
            538-667             JAXUCZ010000021.1  101960671-101960800 c
            668-723             JAXUCZ010000021.1  101960388-101960443 c
            724-765             JAXUCZ010000021.1  101958480-101958521 c
            766-838             JAXUCZ010000021.1  101957696-101957768 c
            839-940             JAXUCZ010000021.1  101957160-101957261 c
            941-1180            JAXUCZ010000021.1  101956540-101956779 c
            1181-1293           JAXUCZ010000021.1  101956254-101956366 c
            1294-1353           JAXUCZ010000021.1  101955901-101955960 c
            1354-1867           JAXUCZ010000021.1  101953508-101954021 c
FEATURES             Location/Qualifiers
     source          1..1867
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq32"
     gene            1..1867
                     /gene="Taf7l"
                     /gene_synonym="RGD1564898"
                     /note="TATA-box binding protein associated factor 7-like"
                     /db_xref="GeneID:363493"
                     /db_xref="RGD:1564898"
     CDS             1..1398
                     /gene="Taf7l"
                     /gene_synonym="RGD1564898"
                     /note="TAF7-like RNA polymerase II, TATA box binding
                     protein (TBP)-associated factor"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit
                     7-like"
                     /protein_id="NP_001129349.1"
                     /db_xref="GeneID:363493"
                     /db_xref="RGD:1564898"
                     /translation="MERGEEAPVEGAPTERAPAEGALAEAALPKAALAEAGAPDISEA
                     PSTHAPTSEETGPKEPQVPISLGAESACDTSDTGGARGLVIPVPSRAEPHGTRPSTAR
                     GRALQKAMRAMSLRHEESHEIEEQFILRLPPVTDGHHAVVQVENVSLPAKLVNLPCVI
                     GSLKTVDRKTFYQTADISQMLVCSPEGEPHSSPEEPVISTGPTVTGHIEGKAEKKKYN
                     WKHGITPPLKNVRKKRFRKTTKKLPDVKQMDEINFSEYTQSPSVEKEVKRLLCSDAEA
                     VSVRWEVVADDDTKEIESQGCISTTSGTPQMGGAGSSEYDVLREMMGETGSNSNDVED
                     KNSKIEDEDEDDQEDEDEDDGNEEKEEETDNSEEELEKELQAKFIQSSLHEKEQDYTS
                     IIMEIQKLIHIKEQKLQQIYKKAQRQKDLLRNVENLTLKRHFQNVLEKLNILEKEKCE
                     QIYHLQEQLKCFLKE"
     exon            1..334
                     /gene="Taf7l"
                     /gene_synonym="RGD1564898"
                     /inference="alignment:Splign:2.1.0"
     exon            335..403
                     /gene="Taf7l"
                     /gene_synonym="RGD1564898"
                     /inference="alignment:Splign:2.1.0"
     exon            404..537
                     /gene="Taf7l"
                     /gene_synonym="RGD1564898"
                     /inference="alignment:Splign:2.1.0"
     exon            538..667
                     /gene="Taf7l"
                     /gene_synonym="RGD1564898"
                     /inference="alignment:Splign:2.1.0"
     exon            668..723
                     /gene="Taf7l"
                     /gene_synonym="RGD1564898"
                     /inference="alignment:Splign:2.1.0"
     exon            724..765
                     /gene="Taf7l"
                     /gene_synonym="RGD1564898"
                     /inference="alignment:Splign:2.1.0"
     exon            766..838
                     /gene="Taf7l"
                     /gene_synonym="RGD1564898"
                     /inference="alignment:Splign:2.1.0"
     exon            839..940
                     /gene="Taf7l"
                     /gene_synonym="RGD1564898"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1180
                     /gene="Taf7l"
                     /gene_synonym="RGD1564898"
                     /inference="alignment:Splign:2.1.0"
     exon            1181..1293
                     /gene="Taf7l"
                     /gene_synonym="RGD1564898"
                     /inference="alignment:Splign:2.1.0"
     exon            1294..1353
                     /gene="Taf7l"
                     /gene_synonym="RGD1564898"
                     /inference="alignment:Splign:2.1.0"
     exon            1354..1867
                     /gene="Taf7l"
                     /gene_synonym="RGD1564898"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggagcgcg gtgaggaagc acccgttgag ggtgctccga ctgaaagagc tccggctgag
       61 ggagctctcg ctgaggcagc tctccccaag gcagctctcg ctgaggcggg ggcccccgat
      121 atttctgaag ccccctcaac acatgctcca acatctgaag aaacgggccc caaagagccc
      181 caagttccta tcagccttgg cgctgaaagt gcttgcgaca catctgacac tggaggtgct
      241 cgaggcctag tgattcctgt tcctagtagg gccgagcctc atgggacccg cccgagtaca
      301 gcccgtggca gagctcttca gaaggctatg cgagctatga gtttaaggca tgaggagtct
      361 catgaaattg aggaacagtt catattgcgt ctgccaccgg taactgatgg acatcatgca
      421 gttgttcaag tagaaaatgt ttcactgcct gctaagctgg ttaatttgcc ttgtgttatt
      481 ggaagcctga aaactgttga tagaaaaaca ttttatcaga cagcggatat ttctcagatg
      541 cttgtatgca gtcctgaagg tgagcctcat tcttctcctg aagaaccagt tatctctact
      601 ggtcctactg ttactggaca tattgaaggg aaggcagaga aaaaaaagta taactggaag
      661 cacggcatta ctccaccact taagaatgtc agaaagaaaa ggttccggaa aacaacaaaa
      721 aagctcccag atgtcaaaca aatggatgaa atcaacttca gtgagtacac tcagtctcca
      781 agtgtggaaa aggaagtgaa gagactgcta tgctcagatg ctgaagctgt cagtgtccgc
      841 tgggaagttg ttgctgatga tgatactaag gaaatagaaa gtcaagggtg catctcaact
      901 acttcaggaa ccccacagat gggtggtgct ggttcatcag aatatgatgt gcttcgggag
      961 atgatgggcg agactggcag caatagtaat gatgtggaag ataagaatag caaaattgag
     1021 gatgaggatg aggatgatca agaggatgaa gatgaagatg atggaaatga agaaaaagag
     1081 gaggagacag acaattctga agaagagtta gaaaaggagc tgcaagccaa atttattcaa
     1141 tctagcctcc atgaaaaaga acaagattac acttcaataa tcatggaaat tcagaaactg
     1201 attcatatca aagaacaaaa gctccagcaa atttataaaa aagcccagcg acagaaggat
     1261 ctccttcgga atgtggaaaa cttgaccctc aagagacatt tccagaatgt tttggagaag
     1321 cttaacatac tggaaaaaga gaagtgtgag cagatttatc acctacagga acaactgaaa
     1381 tgtttcctga aggagtaagg aaagcctcag cctagcacac aaagtggatt aactttccag
     1441 atgaagactc agggggacca catacttctg tccctctagt tactttgttg ggtatttttt
     1501 tctagttaga gtaaatttga ggatcatagt tatatagaag gagacatata tagaaggagt
     1561 tacataaatg cataataagt ttagaaaccc cactaaatag gggattttgt ttctttttgt
     1621 caatttggga ttatatgtat gcatttcttt atcttttact ctatggtacc atgagatcat
     1681 ccagccatct ttgtcaaaga tccataggtg ttttacgtaa gttagctttt caaacactgt
     1741 tttaagtatt tcctactgta ttgaaaataa tcaatttgtc agcagaagca gaaggtcaaa
     1801 ttgaaggcca ggctggcctt tattgtaaga ccctttctca aaataaaatt aaattaaaac
     1861 atgaaaa
//
