LOCUS       NM_001107394            1773 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus TATA-box binding protein associated factor 7
            (Taf7), mRNA.
ACCESSION   NM_001107394 XM_001065779 XM_226031
VERSION     NM_001107394.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1773)
  AUTHORS   Louder RK, He Y, Lopez-Blanco JR, Fang J, Chacon P and Nogales E.
  TITLE     Structure of promoter-bound TFIID and model of human pre-initiation
            complex assembly
  JOURNAL   Nature 531 (7596), 604-609 (2016)
   PUBMED   27007846
  REMARK    Erratum:[Nature. 2016 Aug 4;536(7614):112. PMID: 27096372]
REFERENCE   2  (bases 1 to 1773)
  AUTHORS   Wang H, Curran EC, Hinds TR, Wang EH and Zheng N.
  TITLE     Crystal structure of a TAF1-TAF7 complex in human transcription
            factor IID reveals a promoter binding module
  JOURNAL   Cell Res 24 (12), 1433-1444 (2014)
   PUBMED   25412659
REFERENCE   3  (bases 1 to 1773)
  AUTHORS   Bhattacharya S, Lou X, Hwang P, Rajashankar KR, Wang X, Gustafsson
            JA, Fletterick RJ, Jacobson RH and Webb P.
  TITLE     Structural and functional insight into TAF1-TAF7, a subcomplex of
            transcription factor II D
  JOURNAL   Proc Natl Acad Sci U S A 111 (25), 9103-9108 (2014)
   PUBMED   24927529
REFERENCE   4  (bases 1 to 1773)
  AUTHORS   Malkowska M, Kokoszynska K, Rychlewski L and Wyrwicz L.
  TITLE     Structural bioinformatics of the general transcription factor TFIID
  JOURNAL   Biochimie 95 (4), 680-691 (2013)
   PUBMED   23146842
  REMARK    Review article
REFERENCE   5  (bases 1 to 1773)
  AUTHORS   Kamileri I, Karakasilioti I, Sideri A, Kosteas T, Tatarakis A,
            Talianidis I and Garinis GA.
  TITLE     Defective transcription initiation causes postnatal growth failure
            in a mouse model of nucleotide excision repair (NER) progeria
  JOURNAL   Proc Natl Acad Sci U S A 109 (8), 2995-3000 (2012)
   PUBMED   22323595
REFERENCE   6  (bases 1 to 1773)
  AUTHORS   Yuan CX and Gurley WB.
  TITLE     Potential targets for HSF1 within the preinitiation complex
  JOURNAL   Cell Stress Chaperones 5 (3), 229-242 (2000)
   PUBMED   11005381
REFERENCE   7  (bases 1 to 1773)
  AUTHORS   Wu SY, Thomas MC, Hou SY, Likhite V and Chiang CM.
  TITLE     Isolation of mouse TFIID and functional characterization of TBP and
            TFIID in mediating estrogen receptor and chromatin transcription
  JOURNAL   J Biol Chem 274 (33), 23480-23490 (1999)
   PUBMED   10438527
REFERENCE   8  (bases 1 to 1773)
  AUTHORS   Lavigne AC, Mengus G, Gangloff YG, Wurtz JM and Davidson I.
  TITLE     Human TAF(II)55 interacts with the vitamin D(3) and thyroid hormone
            receptors and with derivatives of the retinoid X receptor that have
            altered transactivation properties
  JOURNAL   Mol Cell Biol 19 (8), 5486-5494 (1999)
   PUBMED   10409738
REFERENCE   9  (bases 1 to 1773)
  AUTHORS   Wieczorek E, Brand M, Jacq X and Tora L.
  TITLE     Function of TAF(II)-containing complex without TBP in transcription
            by RNA polymerase II
  JOURNAL   Nature 393 (6681), 187-191 (1998)
   PUBMED   9603525
REFERENCE   10 (bases 1 to 1773)
  AUTHORS   Chiang CM and Roeder RG.
  TITLE     Cloning of an intrinsic human TFIID subunit that interacts with
            multiple transcriptional activators
  JOURNAL   Science 267 (5197), 531-536 (1995)
   PUBMED   7824954
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JACYVU010000299.1.
            
            [WARNING] On Mar 31, 2024 this sequence was replaced by
            NM_001107394.4.
            
            On Nov 27, 2020 this sequence version replaced NM_001107394.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158715.1, EV773024.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-235               JACYVU010000299.1  18904026-18904260   c
            236-1773            JACYVU010000299.1  18902111-18903648   c
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..1773
                     /gene="Taf7"
                     /note="TATA-box binding protein associated factor 7"
                     /db_xref="GeneID:307485"
                     /db_xref="RGD:1309935"
     exon            1..235
                     /gene="Taf7"
                     /inference="alignment:Splign:2.1.0"
     exon            236..1773
                     /gene="Taf7"
                     /inference="alignment:Splign:2.1.0"
     CDS             297..1322
                     /gene="Taf7"
                     /note="TAF7 RNA polymerase II, TATA box binding protein
                     (TBP)-associated factor, 55kDa"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit 7"
                     /protein_id="NP_001100864.1"
                     /db_xref="GeneID:307485"
                     /db_xref="RGD:1309935"
                     /translation="MSKSKDDAPHELESQFILRLPPEYAATVRRAVQSGHVNLKDRLS
                     IELHPDGRHGIVRVDRVPLAAKLVDLPCVTESLKTIDKKTFYKTADISQMLVATVDGD
                     LYPPVEEPAATADPKANKKKDKDKEKKFVWNHGITLPLKNVRKRRFRKTAKKKYIESP
                     DVEKEVKRLLSTDAEAVSTRWEIIAEDETKEAENQGLDISSPGMSGHRQGHDSLEHDE
                     LREIFNDLSSSSEDEEDVNIIDTEEDLERQLQDKLNESDEQHQENEGTNQLVMGIQKQ
                     IDNMKGKLQETQDRAKRQEDLIMKVENLALKNRFQAVLDELKQKEDREKEQLSSLQEE
                     LESLLEK"
ORIGIN      
        1 tttctttcct tcttttctgc gtgggaggag gcttggcaag gtcctctccg gagttcggat
       61 gtttgagcgg cagtgtggcg aggtttcgcg ctgcgggtcc tgagccgttt cgttgttagc
      121 gctcaggtcg ccttgccggg cggctgaaag cgcggacaaa ctggaaggta gacgcaccgc
      181 tcatcgctgc tttactcagg ccgagaaaag ctgagttcat agttgctggt gaactgagct
      241 ggaacttgtt agtgcagcag gtgtttattg gagaagtaat tcacaaggaa gtgaagatga
      301 gtaagagcaa agatgatgca cctcatgagc tagagagcca gtttatctta cggttgcccc
      361 cagaatatgc cgctactgtg aggagggcag tgcagtctgg gcacgtcaac ctgaaagata
      421 gactgagcat tgagttacac cctgatgggc gtcatgggat tgtcagagtg gatagagtgc
      481 ccctggctgc aaaattggta gatttgccgt gtgttacgga gagcttgaaa accattgata
      541 aaaaaacctt ttacaagaca gctgatatct ctcagatgct tgtagccaca gtagatggtg
      601 atctataccc tcctgtggag gagccagctg ctactgctga tcccaaagca aacaagaaaa
      661 aagataagga caaagagaaa aaatttgttt ggaaccatgg aattactcta cctctaaaaa
      721 atgtcagaaa gagaaggttc cggaagacag caaagaagaa gtacattgaa tctccagatg
      781 tggaaaaaga agtaaagcgg ctgctgagta cagatgcaga agctgtcagt actcgttggg
      841 agataattgc tgaagatgaa acaaaggagg cagaaaatca aggccttgat atctcctctc
      901 ctggaatgtc tggccacagg cagggccatg actcactaga gcatgatgag cttcgagaga
      961 tattcaatga cctcagcagc agcagcgaag atgaagaaga tgtaaacatc attgacactg
     1021 aagaggatct ggagagacag ctacaggaca agctaaatga gtcagatgaa caacaccaag
     1081 aaaatgaagg aaccaatcag ttggttatgg ggattcagaa gcagattgat aatatgaaag
     1141 gcaagcttca agaaacccaa gacagagcaa agcgccagga ggatctcatc atgaaggtag
     1201 aaaacctggc tctgaagaac aggtttcaag ctgttctgga tgagctcaaa cagaaggaag
     1261 accgggaaaa ggagcagctt agctctttgc aagaagagct ggaatcactt ctggagaagt
     1321 gaaaaggttg actttagtcc ttagactagt cagcttaaga agaatttatt ttcagagtga
     1381 ggtcttgaaa aattcttctt ttttctttga aatattctta tttcctgtaa tgctaggagt
     1441 tattgtgttg attgttttca ctcttaagaa aataggatta cataggcaga tttgttgtag
     1501 tgtaaggtta gtgaagtgac aacactgagc ttttaatcac ttcaccatag gactttatta
     1561 caatttgttt cctaagtttc tagtcctatt cttcggtgct aagatcagta agaagctagc
     1621 tagcctacag gcaatggagt gttttttttt tttttttttt gttttttttt taagaaatat
     1681 atttttttac cttctcagca agtttccatg ttacagaaat gcaagttttt tcataaaagt
     1741 tgttttttgc acaataaaag ttactaattt tca
//
