LOCUS       NM_001107575            2049 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus TATA-box binding protein associated factor 6 like
            (Taf6l), mRNA.
ACCESSION   NM_001107575 XM_001077510 XM_219557
VERSION     NM_001107575.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2049)
  AUTHORS   Seruggia,D., Oti,M., Tripathi,P., Canver,M.C., LeBlanc,L., Di
            Giammartino,D.C., Bullen,M.J., Nefzger,C.M., Sun,Y.B.Y.,
            Farouni,R., Polo,J.M., Pinello,L., Apostolou,E., Kim,J., Orkin,S.H.
            and Das,P.P.
  TITLE     TAF5L and TAF6L Maintain Self-Renewal of Embryonic Stem Cells via
            the MYC Regulatory Network
  JOURNAL   Mol Cell 74 (6), 1148-1163 (2019)
   PUBMED   31005419
REFERENCE   2  (bases 1 to 2049)
  AUTHORS   Spedale,G., Timmers,H.T. and Pijnappel,W.W.
  TITLE     ATAC-king the complexity of SAGA during evolution
  JOURNAL   Genes Dev 26 (6), 527-541 (2012)
   PUBMED   22426530
  REMARK    Review article
REFERENCE   3  (bases 1 to 2049)
  AUTHORS   Kang,D., Oh,S., Ahn,S.M., Lee,B.H. and Moon,M.H.
  TITLE     Proteomic analysis of exosomes from human neural stem cells by flow
            field-flow fractionation and nanoflow liquid chromatography-tandem
            mass spectrometry
  JOURNAL   J Proteome Res 7 (8), 3475-3480 (2008)
   PUBMED   18570454
REFERENCE   4  (bases 1 to 2049)
  AUTHORS   Martinez,E., Palhan,V.B., Tjernberg,A., Lymar,E.S., Gamper,A.M.,
            Kundu,T.K., Chait,B.T. and Roeder,R.G.
  TITLE     Human STAGA complex is a chromatin-acetylating transcription
            coactivator that interacts with pre-mRNA splicing and DNA
            damage-binding factors in vivo
  JOURNAL   Mol Cell Biol 21 (20), 6782-6795 (2001)
   PUBMED   11564863
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473953.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_219557.4, XM_001077510.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: BC168911.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMEA5760434 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..2049
                     /gene="Taf6l"
                     /note="TATA-box binding protein associated factor 6 like"
                     /db_xref="GeneID:309194"
                     /db_xref="RGD:1310123"
     exon            1..94
                     /gene="Taf6l"
                     /inference="alignment:Splign:2.1.0"
     exon            95..151
                     /gene="Taf6l"
                     /inference="alignment:Splign:2.1.0"
     CDS             144..2015
                     /gene="Taf6l"
                     /note="TAF6-like RNA polymerase II, p300/CBP-associated
                     factor (PCAF)-associated factor"
                     /codon_start=1
                     /product="TAF6-like RNA polymerase II p300/CBP-associated
                     factor-associated factor 65 kDa subunit 6L"
                     /protein_id="NP_001101045.1"
                     /db_xref="GeneID:309194"
                     /db_xref="RGD:1310123"
                     /translation="MHSSTGAMSEREERRFVEIPRESVRLMAESTGLELSDEVAALLA
                     EDVCYRLREATQNSSQFMKHTKRRKLTVEDFNRALRWSSVEAVCGYGSQEVLPLRPAR
                     EGELYFPEDREVNLVELALATNIPKGCAETAVRVHVSYLDGKGNLAPQGSVPSAVSSL
                     TDDLLKYYQQVTRAVLGDDPQLMKVALQDLQTNSKIAALLPYFVYVVSGVKSVSHDLE
                     QLHRLLQVARSLIRNPHLCLGPYVRSLVGSVLYCVLEPLAASINPLNDHWTLRDGAAL
                     LLSHIFWTHGDLVSGLYQQILLSLQKVLTDPVRPLCSHYGAVVGLHALGWKAVERVLY
                     PHLPTYWTNLQAVLDDYSVSNAQVKADGHKVYGAILVAVERLLKMKAQAAEPNRGGLG
                     GRGYRPAEDLPWDSLLLQESPPGGGSEPGFGSGLLLPSGVAGSEDPSSLTLADIYREL
                     YSFFGDSLATRFGTGQPAPTAPRPPGDKKEPATTPDSVRKMPQLTASAVVSPQGDESP
                     CGGTLAAANATSESRPLPRVHRARGAPRQQGPGAGTRDVFQKSRFAPRGAPHFRFIIA
                     GRQAGRRCRGRLFQTAFPAPYGPSPASRYVQKLPMIGRTGRPARRWALSDYSLYLPL"
     exon            152..311
                     /gene="Taf6l"
                     /inference="alignment:Splign:2.1.0"
     exon            312..398
                     /gene="Taf6l"
                     /inference="alignment:Splign:2.1.0"
     exon            399..549
                     /gene="Taf6l"
                     /inference="alignment:Splign:2.1.0"
     exon            550..600
                     /gene="Taf6l"
                     /inference="alignment:Splign:2.1.0"
     exon            601..695
                     /gene="Taf6l"
                     /inference="alignment:Splign:2.1.0"
     exon            696..770
                     /gene="Taf6l"
                     /inference="alignment:Splign:2.1.0"
     exon            771..991
                     /gene="Taf6l"
                     /inference="alignment:Splign:2.1.0"
     exon            992..1124
                     /gene="Taf6l"
                     /inference="alignment:Splign:2.1.0"
     exon            1125..1253
                     /gene="Taf6l"
                     /inference="alignment:Splign:2.1.0"
     exon            1254..2049
                     /gene="Taf6l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcctgagcgc ggagagaggg aattaccgtg agccggtgag tggaagcaac cttctcctcc
       61 ccggcaggcg ccttcccgac gccggagtcc ggagcaagtg tgaatggggg catagtgtgt
      121 gctgatcctg ctggaggctt gggatgcaca gttccactgg agccatgtca gaaagagaag
      181 agaggcggtt tgtggagatc cctcgggagt cagtccggct catggcagag agcaccgggc
      241 tggagctgag tgacgaagtg gccgctctgc ttgctgaaga tgtgtgctac cgtctcagag
      301 aggccaccca gaacagctct cagttcatga aacacaccaa acgaaggaag ctgacagtgg
      361 aggacttcaa cagggctctc aggtggagca gtgtggaggc tgtgtgtggc tatgggtccc
      421 aggaggtgtt gcccttgcgc cctgcaaggg agggggaact ctactttcca gaggatcgag
      481 aagtgaacct ggtggagctg gcactggcca ctaacatccc caagggctgt gcagagacag
      541 ccgtcagagt tcatgtctcc tatctggatg gcaagggaaa tctggcacct cagggatcag
      601 tgcccagtgc agtgtcttca ctgacagatg acctgctcaa atactaccag caagtgacac
      661 gggctgtgct gggcgatgat ccacagctga tgaaggttgc cctccaggac ctgcagacaa
      721 actccaagat tgcagcactc ctgccttact ttgtttatgt ggtcagtggg gtaaaatctg
      781 taagccacga cctggagcag ctgcaccgac tactgcaggt agcacggagc ctgatacgga
      841 acccacacct ctgcttgggg ccctatgtcc gatctctggt gggcagcgtg ctttactgtg
      901 tcttggagcc actggctgcc tccatcaacc ctttgaatga ccactggact ctgcgagatg
      961 gggctgccct cctactcagc cacatcttct ggactcatgg agaccttgta agtggcctct
     1021 atcagcagat tctgctctcc ctgcagaagg tcctgacaga ccctgtacgg cctctctgtt
     1081 ctcactatgg ggcagtggta gggctgcatg ctctaggctg gaaggcagtg gagcgagtcc
     1141 tctacccaca tctgcctact tactggacaa acttgcaggc tgtgctggat gactattccg
     1201 tatctaatgc ccaggtcaaa gcagatgggc acaaagtata tggagctatt ctggtagccg
     1261 tagagcgact acttaagatg aaagcccagg cagcagaacc caaccgcggt ggccttggcg
     1321 ggagagggta ccgtcctgcg gaggacctgc cttgggacag ccttctctta caagagtctc
     1381 cccctggggg cggttccgaa ccaggttttg ggtctggcct cctgctgccg tcaggggttg
     1441 cgggatcaga ggatccttct tccttgaccc tagcagacat ctaccgtgaa ctatactcct
     1501 tctttggtga cagcctggcc acccgcttcg gcactggcca gcctgctccc acggccccac
     1561 gaccgcccgg agacaagaag gagcctgcaa ctaccccgga ttcagtgcgg aaaatgccgc
     1621 agctgactgc cagcgccgtg gtcagccctc agggtgacga aagcccatgc ggtggaaccc
     1681 tcgccgccgc caacgccacc tcggagagca ggccgctacc tcgtgtacac cgggcgcgag
     1741 gcgctcctcg tcagcagggt cccggcgcgg gaacgcgaga cgtcttccag aagagccgct
     1801 tcgcgccccg cggcgcccct cacttccggt ttataatcgc agggcgtcag gccgggcggc
     1861 gctgccgcgg gcgcctcttt caaactgctt tccctgcacc gtatgggccc agtcccgcgt
     1921 cccgctacgt gcagaagttg cccatgatcg gccgtactgg ccgcccggcc cgccgctggg
     1981 cgctctcaga ctattcgctg tacctgccgc tatgaggctg ctaagcctcc gagaataaac
     2041 ccgcacccg
//
