LOCUS       NM_001107442            2902 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus TATA-box binding protein associated factor 5 like
            1 (Taf5l1), mRNA.
ACCESSION   NM_001107442 XM_001053692 XM_008772615 XM_226577
VERSION     NM_001107442.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2902)
  AUTHORS   Seruggia,D., Oti,M., Tripathi,P., Canver,M.C., LeBlanc,L., Di
            Giammartino,D.C., Bullen,M.J., Nefzger,C.M., Sun,Y.B.Y.,
            Farouni,R., Polo,J.M., Pinello,L., Apostolou,E., Kim,J., Orkin,S.H.
            and Das,P.P.
  TITLE     TAF5L and TAF6L Maintain Self-Renewal of Embryonic Stem Cells via
            the MYC Regulatory Network
  JOURNAL   Mol Cell 74 (6), 1148-1163 (2019)
   PUBMED   31005419
REFERENCE   2  (bases 1 to 2902)
  AUTHORS   Spedale,G., Timmers,H.T. and Pijnappel,W.W.
  TITLE     ATAC-king the complexity of SAGA during evolution
  JOURNAL   Genes Dev 26 (6), 527-541 (2012)
   PUBMED   22426530
  REMARK    Review article
REFERENCE   3  (bases 1 to 2902)
  AUTHORS   Martinez,E., Palhan,V.B., Tjernberg,A., Lymar,E.S., Gamper,A.M.,
            Kundu,T.K., Chait,B.T. and Roeder,R.G.
  TITLE     Human STAGA complex is a chromatin-acetylating transcription
            coactivator that interacts with pre-mRNA splicing and DNA
            damage-binding factors in vivo
  JOURNAL   Mol Cell Biol 21 (20), 6782-6795 (2001)
   PUBMED   11564863
REFERENCE   4  (bases 1 to 2902)
  AUTHORS   Brand,M., Yamamoto,K., Staub,A. and Tora,L.
  TITLE     Identification of TATA-binding protein-free TAFII-containing
            complex subunits suggests a role in nucleosome acetylation and
            signal transduction
  JOURNAL   J Biol Chem 274 (26), 18285-18289 (1999)
   PUBMED   10373431
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On or before Mar 5, 2021 this sequence version replaced
            XM_008772615.3, NM_001107442.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643290.53375.1,
                                           SRR26643286.45960.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760434 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-178               JAXUCZ010000019.1  68907920-68908097   c
            179-323             JAXUCZ010000019.1  68896562-68896706   c
            324-428             JAXUCZ010000019.1  68894446-68894550   c
            429-2902            JAXUCZ010000019.1  68889158-68891631   c
FEATURES             Location/Qualifiers
     source          1..2902
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..2902
                     /gene="Taf5l1"
                     /gene_synonym="Taf5l"
                     /note="TATA-box binding protein associated factor 5 like
                     1"
                     /db_xref="GeneID:307927"
                     /db_xref="RGD:1310215"
     exon            1..178
                     /gene="Taf5l1"
                     /gene_synonym="Taf5l"
                     /inference="alignment:Splign:2.1.0"
     exon            179..323
                     /gene="Taf5l1"
                     /gene_synonym="Taf5l"
                     /inference="alignment:Splign:2.1.0"
     CDS             182..1951
                     /gene="Taf5l1"
                     /gene_synonym="Taf5l"
                     /note="TAF5-like RNA polymerase II, p300/CBP-associated
                     factor (PCAF)-associated factor"
                     /codon_start=1
                     /product="TAF5-like RNA polymerase II p300/CBP-associated
                     factor-associated factor 65 kDa subunit 5L"
                     /protein_id="NP_001100912.2"
                     /db_xref="GeneID:307927"
                     /db_xref="RGD:1310215"
                     /translation="MKRVRTEQVQVAVSCYLKRRQYVDSEGPLKQGLRLSQTPEEMAA
                     NLTVQSESGCANAVSAAPCQAEPQQYEVQFGRLRNFLTDSDSQYSHEVMPLLYPLFVY
                     LHLNLVQSGPKSTVESFYSRFHGMFLQNASQKDIIEQLQTTQTIQDILSNFQLRAFLD
                     NKYVVRLQEDSYNYLIRYLQSDNNTALCKVLAVHIHLDVQPAKRTDYQLYASGGSSRS
                     ESSSLEPPDVPNPILQNEAALEVLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEI
                     SSDSKLLAAGFDNSCIKLWSLRSKKLKSEPHCVDTSRVRLACDTLEEEESEDDDVGTE
                     MKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDI
                     SPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTV
                     RLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRG
                     HTDSITSLAFSPDSGLIASASMDNSVRVWDIRSTCCNTPADGSSGELVGVYTGQMSNV
                     LSVQFMACNLLLVTGITQENQEH"
     exon            324..428
                     /gene="Taf5l1"
                     /gene_synonym="Taf5l"
                     /inference="alignment:Splign:2.1.0"
     exon            429..2902
                     /gene="Taf5l1"
                     /gene_synonym="Taf5l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccggctgcac gcgcccggag accccgcggc cccgccgggc gccctcgcgc ggagccaact
       61 gtgcgagctc acgagggcgc tcggcggaag tgggcagcgg acggacggct cgcggcggct
      121 gccgccggga gacgcagccc ggcggacctc gcaggcgctc tggctccggc gtcgagaggt
      181 catgaaacga gtgcgcacgg agcaggttca ggtggcagtg tcctgctacc tcaaacgccg
      241 gcagtacgtg gactcagaag gccctttgaa gcaaggcctg agactctcac agacccctga
      301 ggagatggcg gccaacctca cagtccaatc agaatctggt tgtgccaatg cggtgtctgc
      361 agccccttgc caggcagaac cccagcaata tgaagtacag tttggacgac tgaggaactt
      421 tctcactgat tctgactccc agtacagcca tgaagttatg cctctcctct accctctctt
      481 tgtctacctc cacctcaacc tggtccagag tggccccaag agcaccgtgg aaagcttcta
      541 tagccgcttc catggaatgt tcctgcagaa tgcaagtcag aaggacatca tcgagcaact
      601 gcagaccacg cagaccatcc aggatattct gtcaaacttc cagcttcgtg cattcctgga
      661 caacaagtat gtggtccgtc tccaggaaga tagctacaac taccttatcc gctacctcca
      721 aagcgacaac aacactgccc tgtgcaaggt gctcgccgtg cacattcact tggacgtgca
      781 gcctgctaag aggacagact accagctgta tgccagtggt ggctcctccc gcagtgaaag
      841 cagcagcctg gagccaccag atgtgcccaa ccctatcctg cagaacgagg ctgccctgga
      901 ggtcttgcag gagagtatca agcgggtcaa ggatggacct ccctccctca ccaccatctg
      961 cttctacgcc ttctataaca cagagcagct gctgaatacc gcagagatct cctctgacag
     1021 caaactgctg gctgctgggt ttgacaactc ctgcataaag ctctggagct tgcggtccaa
     1081 aaaactgaag tcagagcccc actgtgtgga cacatcccgt gtccggctgg cttgtgacac
     1141 tctggaggag gaggagagcg aagacgatga cgtaggcacg gaaatgaaga ttctgcgggg
     1201 acactgtggc ccagtgtata gcacacggtt cctcgcggac agctcagggc tgctctcttg
     1261 ttctgaagat atgtccatca ggtactggga cctggggagc ttcaccaaca ctgtgctgta
     1321 tcagggacat gcctaccctg tgtgggacgt ggacatcagc ccctacagcc tgtactttgc
     1381 cagtgggtcc catgaccgta ccgccaggct gtggtctttt gatcggacgt acccgctgag
     1441 gatatatgcg gggcacctgg cagatgtgga ctgtgtcaaa ttccacccca actcaaacta
     1501 cttagctact ggctccactg acaaaactgt tcgtctatgg agtgcccagc aggggaactc
     1561 agtgcggctt tttacaggtc accgaggccc cgtgctctcc ctctcctttt ctcccaatgg
     1621 taagtacttg gcatctgctg gtgaggacca gcggttaaag ttgtgggact tggcctctgg
     1681 gacacttttt aaagaactga gaggccacac ggacagcatc accagtctgg cctttagccc
     1741 ggacagcggt ctgattgctt ctgcctccat ggacaactct gtacgcgtct gggacatcag
     1801 aagcacgtgc tgcaacacac cagctgacgg ctcttctggg gagcttgtgg gcgtgtacac
     1861 tgggcagatg agcaacgtcc tgagtgtaca gttcatggcc tgcaacctcc tcctagtgac
     1921 tggaatcaca caagagaatc aagaacatta agttttgatc caggtggcag actgggtggg
     1981 gctggaagag tggtcacagt ccaggacttg ctaaaactga atcagtgatt gcaaaagagc
     2041 cttcccctac cccacatgca ctctacacag ccctggtgca taagactcca gttgagagct
     2101 gggaagctcc ccccaggcct gaggcctcct gcttcatgca ggcatcgtgc ttttgcatct
     2161 gtctcttccc agtgggtgta ctggacagct gcagaactct ccctatagca gctgtagaca
     2221 gtctctcctg tggctgcccc ttgagggaag tggggacaaa accaggattt ttattatata
     2281 attaatttta ttattgagaa gaggaaacct agcactggca gcaagtgact cctggcactg
     2341 gctataatac ttggaatttt gaggttcagg gaatttagac tctggtggcc cagtgtatca
     2401 ggagaaaggg gcaccataac catatgctgt gcttctgtgg gcaggcaggc aggtagcgac
     2461 tgagcatggg ctcctgcagt gatggcggca gaggtggttc ttccattggc tgcacttttg
     2521 tcagccttta taccctgggg agaagcactg tggtgggcag agggtgagcc tcagcgctgc
     2581 gccagtcacc tagggttcca gccctacacc atcaacaaat tatgataaag agtaattttg
     2641 aataagtcac aagatagaca agaaatgctg gatttaaaga taactttttg tggctcgttg
     2701 gtcatttttc tccctcaatg acctgcttcc acctcactgc agtgttgata gtgaacggga
     2761 tgaatcatga gtgcacactc aaaaatatcg accatgctct aaggacaaag caagttctga
     2821 tgtctgctaa aggattaaat atttctgttt tctgaaaaga gttattttgt attttgtttt
     2881 ctattaaaat gtatttagtt tc
//
