LOCUS       NM_001271342            4725 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus TATA-box binding protein associated factor 3
            (Taf3), mRNA.
ACCESSION   NM_001271342 XM_002725301 XM_002728492
VERSION     NM_001271342.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4725)
  AUTHORS   Malkowska,M., Kokoszynska,K., Rychlewski,L. and Wyrwicz,L.
  TITLE     Structural bioinformatics of the general transcription factor TFIID
  JOURNAL   Biochimie 95 (4), 680-691 (2013)
   PUBMED   23146842
  REMARK    Review article
REFERENCE   2  (bases 1 to 4725)
  AUTHORS   Bereczki,O., Ujfaludi,Z., Pardi,N., Nagy,Z., Tora,L., Boros,I.M.
            and Balint,E.
  TITLE     TATA binding protein associated factor 3 (TAF3) interacts with p53
            and inhibits its function
  JOURNAL   BMC Mol Biol 9, 57 (2008)
   PUBMED   18549481
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4725)
  AUTHORS   Soutoglou,E., Demeny,M.A., Scheer,E., Fienga,G., Sassone-Corsi,P.
            and Tora,L.
  TITLE     The nuclear import of TAF10 is regulated by one of its three
            histone fold domain-containing interaction partners
  JOURNAL   Mol Cell Biol 25 (10), 4092-4104 (2005)
   PUBMED   15870280
REFERENCE   4  (bases 1 to 4725)
  AUTHORS   Pointud,J.C., Mengus,G., Brancorsini,S., Monaco,L., Parvinen,M.,
            Sassone-Corsi,P. and Davidson,I.
  TITLE     The intracellular localisation of TAF7L, a paralogue of
            transcription factor TFIID subunit TAF7, is developmentally
            regulated during male germ-cell differentiation
  JOURNAL   J Cell Sci 116 (Pt 9), 1847-1858 (2003)
   PUBMED   12665565
REFERENCE   5  (bases 1 to 4725)
  AUTHORS   Gangloff,Y.G., Pointud,J.C., Thuault,S., Carre,L., Romier,C.,
            Muratoglu,S., Brand,M., Tora,L., Couderc,J.L. and Davidson,I.
  TITLE     The TFIID components human TAF(II)140 and Drosophila BIP2
            (TAF(II)155) are novel metazoan homologues of yeast TAF(II)47
            containing a histone fold and a PHD finger
  JOURNAL   Mol Cell Biol 21 (15), 5109-5121 (2001)
   PUBMED   11438666
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On or before Sep 19, 2012 this sequence version replaced
            XM_002728492.2, XM_002725301.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760383, SAMEA5760386
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-302               JAXUCZ010000017.1  73365162-73365463
            303-545             JAXUCZ010000017.1  73371403-73371645
            546-2371            JAXUCZ010000017.1  73481444-73483269
            2372-2454           JAXUCZ010000017.1  73492449-73492531
            2455-2704           JAXUCZ010000017.1  73511767-73512016
            2705-2811           JAXUCZ010000017.1  73514828-73514934
            2812-2965           JAXUCZ010000017.1  73516056-73516209
            2966-4725           JAXUCZ010000017.1  73516294-73518053
FEATURES             Location/Qualifiers
     source          1..4725
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17q12.3"
     gene            1..4725
                     /gene="Taf3"
                     /note="TATA-box binding protein associated factor 3"
                     /db_xref="GeneID:100360100"
                     /db_xref="RGD:2324594"
     exon            1..302
                     /gene="Taf3"
                     /inference="alignment:Splign:2.1.0"
     CDS             137..2929
                     /gene="Taf3"
                     /note="TAF3 RNA polymerase II, TATA box binding protein
                     (TBP)-associated factor, 140kDa"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit 3"
                     /protein_id="NP_001258271.1"
                     /db_xref="GeneID:100360100"
                     /db_xref="RGD:2324594"
                     /translation="MCESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQ
                     LGRGCHRYSELYGRTDPILDDVGEAFQLMGVNLHELEDYIHNIEPVTFPHQIPSFPVS
                     KNSVLQFPQPGSKDAEERKDYIPDYLPPIVSSQEEEEEEQVPTDGGTSAEAMQVPLEE
                     DDELEEEEVINDENFLGKRPLDSPEVEEMPSMKRPRLLNSKGDSLDVVLLEAREPLSS
                     INPQKIPPMLSPVHVQDSTDLAPPSPEPPMLAPFAKSQLPIAKPLETKPFTPKTKTKA
                     SSPGQKTKSPKAALSPARLGSPIRSPKTIPKEKKSPGRSKSPKSPKSPKIVTHVPQPP
                     VRPETPNRTPSAMVVEKTVKETIPVKPTQTPPETGKLNIEMQLKKGVVTDKTIDDSID
                     AVIARACAEREPDPFEFSSGSESEGDTFTSPKRISVSECTTPKASTSSNNFTKSLATP
                     LPLSGGTSSSDNSWTMDASIDEVVRKAKLGAPSNMPPTFPYISSPSISPPTPEPLHKG
                     YEEKAKPPPSVDVKKKLKKELKTKLKKKEKQRDRERERERNKEKSKEKDKVREREKEK
                     EAGKEVKYPWKELMKDEESDPYKFKIKEFEDIDAKVRLKDGIVRREREKHKDKKKDRE
                     RGKREKDKRERERLKEKSREDKIKAPPTQLVLPPKEMALPLFSPAAVRVPAMLPAFSP
                     MLPEKLFEEKEKPKEKERKKDKKEKKKKKEKEKEKEKKEKEKEKEKREREKREKEKER
                     HKHEKIKVEPVIPAPSPVIPRLTLRVGAGQDKIVISKVVPAPEAKPAPSLNRPKTPPP
                     APVPIPVRVSPTPLPPPLLAQAAVCPALMPSPAPALSAAGSAKAPVRSVVTETVSTYV
                     IRDEWGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN
                     KIKKDKKHKRRKHRAH"
     exon            303..545
                     /gene="Taf3"
                     /inference="alignment:Splign:2.1.0"
     exon            546..2371
                     /gene="Taf3"
                     /inference="alignment:Splign:2.1.0"
     exon            2372..2454
                     /gene="Taf3"
                     /inference="alignment:Splign:2.1.0"
     exon            2455..2704
                     /gene="Taf3"
                     /inference="alignment:Splign:2.1.0"
     exon            2705..2811
                     /gene="Taf3"
                     /inference="alignment:Splign:2.1.0"
     exon            2812..2965
                     /gene="Taf3"
                     /inference="alignment:Splign:2.1.0"
     exon            2966..4725
                     /gene="Taf3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtcgctcgg ggccggaggg ggacgatttc cccgccgcgg ggcccccaga gaatgaatcg
       61 ggggctctgc tgaagcgaga cggcagggct ggagagcagt ggcagcaaag ggctgcggtg
      121 gcgtccacgc agcgggatgt gcgagagtta ctccaggtcg ttgttgaggg tctcggtggc
      181 gcagatctgc caggcgctgg gctgggactc ggtgcagctc agtgcctgcc acctcctcac
      241 cgacgtcctg cagcgttatc tgcagcagct gggccggggc tgccatcggt actctgaact
      301 ctatggccga acagatccca ttttggatga cgttggtgaa gccttccaac ttatgggggt
      361 taatctgcac gaactagaag actatattca taatattgaa cctgtcactt tcccacatca
      421 aattccttct tttcctgtta gcaagaacag tgtccttcag tttcctcagc caggaagtaa
      481 agatgcagag gaaagaaaag actacattcc ggattacctg ccccccatcg tgtcttctca
      541 agaagaggag gaagaggaac aggtgcccac tgatgggggc acctcagcag aagccatgca
      601 ggtgcccttg gaagaagatg atgaattgga ggaggaggaa gtcatcaatg atgagaactt
      661 cttgggtaag aggccactgg acagtcctga agtggaagaa atgccctcca tgaagcgccc
      721 acgactcctg aactctaaag gggactccct agatgttgtg ttgttagaag cacgagaacc
      781 tctcagctca ataaatccac agaagatccc accaatgctt tctcctgtgc atgtccagga
      841 cagtacggat ctggcccctc catcaccaga gccccccatg ctggctccat ttgcaaagtc
      901 acaactacca attgcaaagc cattagaaac aaaaccattt acaccgaaaa caaagactaa
      961 agctagctct cccggtcaga aaactaaatc acccaaggct gccctatcac cagcaaggct
     1021 tggaagtcct attcggtcac caaaaaccat ccccaaagag aagaaatcac ctggacgttc
     1081 taagagcccc aagagtccta agagccccaa gattgtaacc catgttcccc aaccccctgt
     1141 cagacctgaa acaccaaata ggaccccttc agctatggtg gttgaaaaaa ctgttaagga
     1201 gactatccca gtgaaaccaa cacagacgcc cccggaaact gggaaactga acattgaaat
     1261 gcagctgaaa aaaggtgttg tgacagacaa aaccatcgat gactccatcg atgctgtgat
     1321 tgcacgagcc tgtgcagagc gggagccaga ccctttcgag ttttcttctg gatcagaatc
     1381 cgaaggagac acttttacga gtcctaagag gatttcagtg tcagagtgca ccactccgaa
     1441 agcttccact tcctccaata actttactaa gtccctcgct actcctctgc ctctctctgg
     1501 tggaacctcc agttcggata actcgtggac aatggatgcc tctattgatg aggtggtacg
     1561 gaaggcaaag ctgggagccc cttccaacat gcctcccacc ttcccctata tctcgtctcc
     1621 ctccatttct cctcccactc ctgaacctct gcacaagggg tatgaggaga aagccaagcc
     1681 gccaccttcc gtggatgtga agaagaagtt gaaaaaagaa ctgaagacta agttgaaaaa
     1741 gaaagaaaag cagcgagaca gagagaggga gagagagaga aacaaagaaa aaagcaaaga
     1801 gaaggataaa gtgagagaga gggagaagga gaaggaagct ggaaaggagg ttaagtaccc
     1861 atggaaggag ttgatgaaag acgaagagtc cgatccctat aagtttaaaa tcaaagagtt
     1921 tgaagacatt gatgcgaaag tgcgattgaa agatgggatc gtgaggagag agcgagagaa
     1981 gcataaggac aagaagaaag accgagaaag aggcaagcgg gagaaagata agcgggaaag
     2041 ggaaaggctt aaagaaaaaa gcagagaaga caagataaag gcccctccaa cgcagctggt
     2101 gttgccccca aaagaaatgg cactgcctct attcagccct gcagcagtga gggtcccggc
     2161 catgctgccg gccttctcgc caatgctccc ggaaaaactg tttgaggaaa aagagaagcc
     2221 caaggagaaa gaaaggaaaa aggacaaaaa ggagaagaag aagaagaaag agaaggagaa
     2281 ggaaaaggag aagaaagaga aggagaagga aaaggagaaa agggagcgag agaagagaga
     2341 gaaagaaaag gagagacaca agcatgaaaa aataaaagtg gagcccgtca tcccagcccc
     2401 aagtccagtt atccccaggt tgactcttcg agttggcgct ggccaggaca agattgtcat
     2461 cagcaaggtg gtgccagccc cggaggctaa gcccgctcct tctctgaaca gacctaaaac
     2521 cccgcctccg gcccctgtcc ctattcctgt acgagtgagc cctactccat tgccgccacc
     2581 actcctcgcc caggctgcgg tgtgccctgc cctgatgcca tccccagccc ctgccctctc
     2641 tgcagcaggg agcgccaaag ccccagtgcg gagcgtcgtg accgagacag tcagcactta
     2701 cgtgatccgt gatgagtggg gcaatcagat ctggatctgt ccaggttgca acaagccaga
     2761 tgacggcagc ccaatgattg gctgtgacga ctgtgacgat tggtaccact ggccctgtgt
     2821 gggaatcatg gctgctcctc cggaagaaat gcagtggttc tgccccaagt gtgccaacaa
     2881 gataaagaaa gacaagaagc acaagaggag gaagcaccgg gcacactgac gtctgcgtgg
     2941 gcgggactgc tgccccgcac cgggccgggc cggggctggc ccagttctgc catccgtctc
     3001 ccccaggccc tgtggacagc gcatccccag gagcaaggac aagaacatgc cattgctctg
     3061 gacgctccct tctgaaacac acgggcctga gctcccacag catgttgctg aagagaaact
     3121 ccagtagagg cctggcctga gggctggcac ctccatctgc ctattaccag tgacaagtat
     3181 taataaagac accacacatc ttccctcttg acttccttct tctctcagaa cctttattcc
     3241 ggtgttaggt aagacgtctg tacaaacgcc cagactgact ggaggatgcg tcagtcgctc
     3301 tacagtttgc aagccgctcc ctccctccac agcgaggtga cccgcaggag agagcgctcc
     3361 agtcagagga ctggtaaata tttttgtgat gagagtatat gaagcccccc acctcaccca
     3421 acttttatta ctagcgtgta aaatgttcag gcttttgtga gataccttat attttttaag
     3481 aaaagggttt ctatcatgtc ctgtccacct ctgcaaattc ttttcattta gcgtatttta
     3541 taacttggat tcttattcta ctgtgtgagc tgctggagtc cctctcgctg cgtgtgcatc
     3601 ccatcaactt gtataaaact cttgatactg agaaaaatcc cccactgtaa ataataaata
     3661 tttatgaagt agttattttt aaaatttttt tatcgtgttt aattctggct ttctctggaa
     3721 tccactgtga tttcagccat gtctgtaatt gctgctgtac ataggcaaag agagagaagg
     3781 gcccagacca tgtccctccc tagacaccct gcccacatgg cgggcagagg accctagcaa
     3841 ttggaaggaa acaaggcaat tgacacctcg agtcaatggc ttgaaatcgt tttgtttgtt
     3901 acatatttcc tgtaaatttc tctcactttt actaaaagga catgtagttt ccacaaaagt
     3961 aaaaaaagaa aaaatactgt agcattttgt gtttatattg ttttatttct acagatttgt
     4021 tcatggatat tgtgctttaa ggttgaaatg aagtatatta tggatttttt taagaaaact
     4081 catcaaattt cagggtatca caaaacttta ttatattgct atactgccca ctatttatta
     4141 tatgttatag atatctgaaa cataaaccaa atgttttatt tttaatgtaa aaaaaagcat
     4201 caaatttaac tttattagca tattttagtg gctttgaaat aactatggac ctttacttga
     4261 ttttgaaata atcccaatct gggcatgtgt gaaggcgatc ttgaatgtta gaactcggaa
     4321 tttgaaccta atacaaatat atgagtagaa atgtgatttt ttttttactg ccaactcaat
     4381 tgacattagt attatagtca ctcctatttt aaaacatata atgtggtttc agaaatgtgg
     4441 ttctctgcct tgatgttaaa ttgcagaaca gtggtaacgg agtcaacctg cgaagagtgt
     4501 ggaagtcact cccctccttg ttctagaagc cagaagtttt cgtcacccct gccccccaaa
     4561 aagtatctat gtcgagatat gtgtctcttt tctttttcat tcactagaga tcattctaaa
     4621 tactttatac aatattttca catgcacaaa gaatacccat tagtgctttt tggagaagac
     4681 gaaggatggg ggaagtacaa aataaagatt attggctgtt tcgta
//
