LOCUS       NM_001393862            1479 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus TATA-box binding protein associated factor, RNA
            polymerase I subunit D (Taf1d), transcript variant 1, mRNA.
ACCESSION   NM_001393862
VERSION     NM_001393862.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1479)
  AUTHORS   Knutson,B.A. and Hahn,S.
  TITLE     TFIIB-related factors in RNA polymerase I transcription
  JOURNAL   Biochim Biophys Acta 1829 (3-4), 265-273 (2013)
   PUBMED   22960599
  REMARK    Review article
REFERENCE   2  (bases 1 to 1479)
  AUTHORS   Schneider,D.A.
  TITLE     RNA polymerase I activity is regulated at multiple steps in the
            transcription cycle: recent insights into factors that influence
            transcription elongation
  JOURNAL   Gene 493 (2), 176-184 (2012)
   PUBMED   21893173
  REMARK    Review article
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.995836.1,
                                           SRR26360181.1106014.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-47                JAXUCZ010000008.1  20427976-20428022
            48-139              JAXUCZ010000008.1  20429344-20429435
            140-518             JAXUCZ010000008.1  20430162-20430540
            519-694             JAXUCZ010000008.1  20431596-20431771
            695-746             JAXUCZ010000008.1  20432083-20432134
            747-899             JAXUCZ010000008.1  20433346-20433498
            900-1479            JAXUCZ010000008.1  20434216-20434795
FEATURES             Location/Qualifiers
     source          1..1479
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q12"
     gene            1..1479
                     /gene="Taf1d"
                     /gene_synonym="Josd3; RGD1309627"
                     /note="TATA-box binding protein associated factor, RNA
                     polymerase I subunit D"
                     /db_xref="GeneID:363017"
                     /db_xref="RGD:1309627"
     exon            1..47
                     /gene="Taf1d"
                     /gene_synonym="Josd3; RGD1309627"
                     /inference="alignment:Splign:2.1.0"
     exon            48..139
                     /gene="Taf1d"
                     /gene_synonym="Josd3; RGD1309627"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..926
                     /gene="Taf1d"
                     /gene_synonym="Josd3; RGD1309627"
                     /note="TBP-associated factor 1D; TATA box-binding
                     protein-associated factor 1D; transcription initiation
                     factor SL1/TIF-IB subunit D; TATA box binding protein
                     (TBP)-associated factor, RNA polymerase I, D, 41kDa;
                     Josephin domain containing 3"
                     /codon_start=1
                     /product="TATA box-binding protein-associated factor RNA
                     polymerase I subunit D"
                     /protein_id="NP_001380791.1"
                     /db_xref="GeneID:363017"
                     /db_xref="RGD:1309627"
                     /translation="MAQSEVDSVDCVTSDRDGDIGNQSDDSSNSSLFKTQCVPSPTRK
                     QRIPTVKCVPSLASVETDSSSDSSLEPRPLTLKAIFERFKKKKRKKRKKRKYKPKLRR
                     QGRPSGTRNIRRSQIDAKQIKDKGAVFPFLESESGRKTLPWKKILTYEQAVARGFFHH
                     IEKLKYEHHLKECLSQMHAGEDLEKEDFDSRRHKYMDDDGPLSPIEEPSTEDEATDPQ
                     SECDIKLVEDSCFIISTEFPRKRNLEQEKIKKESAFSKKSKAKDATQRGNRRSWKGGE
                     HACLHSEVS"
     exon            140..518
                     /gene="Taf1d"
                     /gene_synonym="Josd3; RGD1309627"
                     /inference="alignment:Splign:2.1.0"
     exon            519..694
                     /gene="Taf1d"
                     /gene_synonym="Josd3; RGD1309627"
                     /inference="alignment:Splign:2.1.0"
     exon            695..746
                     /gene="Taf1d"
                     /gene_synonym="Josd3; RGD1309627"
                     /inference="alignment:Splign:2.1.0"
     exon            747..899
                     /gene="Taf1d"
                     /gene_synonym="Josd3; RGD1309627"
                     /inference="alignment:Splign:2.1.0"
     exon            900..1479
                     /gene="Taf1d"
                     /gene_synonym="Josd3; RGD1309627"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcaggctgc tgggcgcgag agcgctcttt tcggcgcggc gaaagagaaa actgggtaaa
       61 gcaaagtgat ggctcaatca gaggtggatt ctgttgactg tgtgacatcg gatagagatg
      121 gggacattgg aaatcaaagt gatgactcat ccaatagcag cttatttaaa acacagtgtg
      181 ttccttcacc tacaagaaag caaagaatcc ctactgtgaa atgtgttcct tcacttgcaa
      241 gtgttgaaac agattcatca agtgactctt ctctagaacc aaggcctttg actttaaagg
      301 ctatttttga aagatttaag aaaaagaaaa ggaaaaagag gaaaaagaga aaatataagc
      361 caaagttaag acgacaagga agaccatctg gaacgaggaa cattagaagg tcacaaatag
      421 atgcaaaaca aattaaagac aaaggagctg tgtttccatt cttagaatct gaaagtggaa
      481 gaaagacttt accttggaag aaaattttaa catatgagca agcagttgca agaggatttt
      541 ttcaccacat tgaaaaactc aagtatgaac accaccttaa ggaatgcttg agccaaatgc
      601 atgctgggga agatttagaa aaggaagact ttgacagccg tagacacaag tacatggatg
      661 atgatggtcc gctttctcct attgaagagc cgtcaactga agatgaagca acagatcctc
      721 agtctgaatg tgatattaag ttggttgaag acagttgctt tataataagt acagaattcc
      781 caaggaagag aaacttagaa caagaaaaga ttaagaaaga atctgcattc tctaaaaaga
      841 gcaaagccaa ggatgccaca cagagaggga acaggaggtc ctggaaagga ggtgaacatg
      901 cttgccttca ttctgaagtc agttaaaaga tgcccatgaa tggatgtttg tttcagtgtt
      961 gtaagtagca tgtcaattta catcttcaca gtatgttagc ttgaagtaag tgatgctatt
     1021 tctatgaaag ttttagagta ctccaatcct taggaaatcc tagaacatta gaatcaataa
     1081 tttgaactga gataagtaaa gaaggctata aggtcttata ctcaatttat aatattataa
     1141 acttttctca agcatggttt ataaattata acaaatttgt aacatcacaa ataataatgt
     1201 ttgaaaagta tgagttaact aaaataggta ctattctaaa aaatcaggtt gcccataagg
     1261 ctcttcatga aaattcagtt ttatgctggc acttaaatta tctttaatct gcctgatgta
     1321 attgtctctg agccttactg cctttttgct aaatgaaggc ctagtcttgg aagcttctag
     1381 cctctgcaca atctgattta ggcctagaat gttttcagcc tctgagactt aactgctgaa
     1441 taaataatct cacacttttc ttgttcttac tgaattttt
//
