LOCUS       NM_001014155            3160 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus TATA-box binding protein associated factor, RNA
            polymerase 1 subunit C (Taf1c), mRNA.
ACCESSION   NM_001014155 XM_341698
VERSION     NM_001014155.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3160)
  AUTHORS   Knutson,B.A. and Hahn,S.
  TITLE     TFIIB-related factors in RNA polymerase I transcription
  JOURNAL   Biochim Biophys Acta 1829 (3-4), 265-273 (2013)
   PUBMED   22960599
  REMARK    Review article
REFERENCE   2  (bases 1 to 3160)
  AUTHORS   Zhai,N., Zhao,Z.L., Cheng,M.B., Di,Y.W., Yan,H.X., Cao,C.Y.,
            Dai,H., Zhang,Y. and Shen,Y.F.
  TITLE     Human PIH1 associates with histone H4 to mediate the
            glucose-dependent enhancement of pre-rRNA synthesis
  JOURNAL   J Mol Cell Biol 4 (4), 231-241 (2012)
   PUBMED   22368283
REFERENCE   3  (bases 1 to 3160)
  AUTHORS   Schneider,D.A.
  TITLE     RNA polymerase I activity is regulated at multiple steps in the
            transcription cycle: recent insights into factors that influence
            transcription elongation
  JOURNAL   Gene 493 (2), 176-184 (2012)
   PUBMED   21893173
  REMARK    Review article
REFERENCE   4  (bases 1 to 3160)
  AUTHORS   Lin,C.Y., Tuan,J., Scalia,P., Bui,T. and Comai,L.
  TITLE     The cell cycle regulatory factor TAF1 stimulates ribosomal DNA
            transcription by binding to the activator UBF
  JOURNAL   Curr Biol 12 (24), 2142-2146 (2002)
   PUBMED   12498690
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC061804.1.
            
            On Apr 20, 2005 this sequence version replaced XM_341698.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC061804.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3160
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..3160
                     /gene="Taf1c"
                     /note="TATA-box binding protein associated factor, RNA
                     polymerase 1 subunit C"
                     /db_xref="GeneID:361420"
                     /db_xref="RGD:1305658"
     exon            1..63
                     /gene="Taf1c"
                     /inference="alignment:Splign:2.1.0"
     exon            64..202
                     /gene="Taf1c"
                     /inference="alignment:Splign:2.1.0"
     CDS             65..2593
                     /gene="Taf1c"
                     /note="TBP-associated factor 1C; TATA box-binding
                     protein-associated factor 1C; transcription initiation
                     factor SL1/TIF-IB subunit C; TATA box binding protein
                     (Tbp)-associated factor, RNA polymerase I, C"
                     /codon_start=1
                     /product="TATA box-binding protein-associated factor, RNA
                     polymerase I, subunit C"
                     /protein_id="NP_001014177.1"
                     /db_xref="GeneID:361420"
                     /db_xref="RGD:1305658"
                     /translation="MDFPSTLRPSLFMAGPLGMTDGPDLSFMCSWRDALTLPGAQPQN
                     CRDQTSSFAKNLLWEPSTPGPLPLVPPGPDPWDPGLAAQDFLFRGGHYYQYQSRVVLD
                     VTEQLSRFLWDHGDIAFAPLGKLMLENFRLEGNRGYSKKVTIVSVKRLLQDLGGHQPW
                     GCPWASLSRRLRRFSILGGPVLSRSVSLLMGRLLHEELATRWEQLLMDEAFTGGALAW
                     LPGRTARAGQLVYPSGGALDKLYFQEVSVNSGGNPRVLEDPGHIQLRGPVRQVVTSTV
                     QGETLLAVRSDYHCAVWKIDKQEPPAPLQVLQVEKGATGISLSPHLSGELAICSRSGT
                     VCLWTPQDGLQTIYKDPETLAFRDPSPWRWADFTAHPRVLTVGDRTGVKMVDIQGPPG
                     CGLLLFCAGAEAACQKGERVLLAQYLGQPGPASTSLHLICTQFSIYLMDERLPLVPML
                     KWDHGLPSAPLLARLLPPASPGYPRPLLLGGQGGQVQLLHIAGEGTSIPQLAGPPQSL
                     PSITDSLSAFPLLEPKRQQQLQERLEAPVIGLAAAPPCASAPGLLLFQLSAAGDVFYQ
                     HLRIQQTSSLREPDHPAPERPASRAAAPPVDQGSTPSWTSRASARCSRWLEALMELSP
                     TNPVWAAPTFSHRRFLGHMERQKSQETLAQKLQAAMAKGQLLRPGDLGTLPKAEPPPA
                     PQCSQQDELTERLTKAWEGQAAAWWKRHQDQTSGSQRQSKRPKRRTQLSSTFSSFTSY
                     MDSPDASSAPHSQDLSNSEACPQPPRTPPSQELTQELWAQGVQHERRQTLRDYMAKLP
                     LQDNPGPVATPPSQTSSRQTRSFRQQTPVLSGSHPPRKKPRMGF"
     exon            203..284
                     /gene="Taf1c"
                     /inference="alignment:Splign:2.1.0"
     exon            285..382
                     /gene="Taf1c"
                     /inference="alignment:Splign:2.1.0"
     exon            383..472
                     /gene="Taf1c"
                     /inference="alignment:Splign:2.1.0"
     exon            473..546
                     /gene="Taf1c"
                     /inference="alignment:Splign:2.1.0"
     exon            547..785
                     /gene="Taf1c"
                     /inference="alignment:Splign:2.1.0"
     exon            786..902
                     /gene="Taf1c"
                     /inference="alignment:Splign:2.1.0"
     exon            903..1020
                     /gene="Taf1c"
                     /inference="alignment:Splign:2.1.0"
     exon            1021..1092
                     /gene="Taf1c"
                     /inference="alignment:Splign:2.1.0"
     exon            1093..1228
                     /gene="Taf1c"
                     /inference="alignment:Splign:2.1.0"
     exon            1229..1366
                     /gene="Taf1c"
                     /inference="alignment:Splign:2.1.0"
     exon            1367..1541
                     /gene="Taf1c"
                     /inference="alignment:Splign:2.1.0"
     exon            1542..1679
                     /gene="Taf1c"
                     /inference="alignment:Splign:2.1.0"
     exon            1680..3077
                     /gene="Taf1c"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagtagttgt gggtggcggc gttgaggagt ggcagtccgg ctcatttgtg tccccgggat
       61 caggatggac ttccccagca ccctgcgtcc ttcgttgttt atggccggtc ctcttggcat
      121 gactgatggc cccgacttgt ccttcatgtg cagctggaga gatgcactga ccctgccagg
      181 ggcccagcca cagaactgca gggaccagac atcgtccttt gccaagaacc tgctgtggga
      241 gccatcgaca ccaggacccc tgcccctggt gcctcctggc cctgatccct gggaccctgg
      301 tctggcagct caggacttcc tcttccgggg aggtcactac taccagtacc agtctcgagt
      361 tgtgctggat gtcactgagc agctcagccg cttcctgtgg gaccatgggg atatagcctt
      421 tgcacccctg gggaaactca tgctggagaa cttcagattg gaggggaacc ggggctactc
      481 gaaaaaggtg accatagtca gcgtgaagag gctgcttcag gacctcggtg gacaccagcc
      541 ctgggggtgt ccctgggctt ccctcagccg ccggctacgt cgattctcta tcctgggggg
      601 tcccgtccta agcaggtccg tgtcattgct catggggagg ttgctgcatg aagagctggc
      661 cacgaggtgg gagcagttgc tgatggatga ggccttcacc gggggtgctt tggcctggct
      721 gcctggaagg acagcacggg ccgggcagct ggtctaccct agtggaggtg ccttggacaa
      781 gctgtatttc caggaggtca gtgtgaattc aggtggcaac cctcgggtcc ttgaggaccc
      841 tgggcacatc cagctgcggg gacctgtacg gcaggtggtg actagcactg tccagggaga
      901 aacgcttctg gccgtccgct ctgactacca ctgtgctgtg tggaagattg ataagcagga
      961 gccaccagca cccctgcagg tgctacaggt ggagaaggga gccactggta ttagcctcag
     1021 ccctcacctg tcaggagagc tggccatctg cagccgttct ggaactgtgt gtctgtggac
     1081 cccacaagat ggactgcaga caatctacaa ggaccctgag acgcttgcct tccgtgatcc
     1141 gtctccctgg cgctgggcag actttactgc ccatccccgg gtgctgactg tgggggaccg
     1201 cacgggtgtg aaaatggttg atattcaggg cccgccgggc tgtgggctgc tgctgttctg
     1261 tgctggagca gaagctgcct gccagaaagg agaacgggtg ttgcttgccc agtacctcgg
     1321 gcagccgggt cctgcctcta cgtctctaca tctcatctgc acccagttct cgatctacct
     1381 gatggatgag cgcctccccc tggtgccaat gcttaagtgg gaccatggcc tgccatctgc
     1441 acccctgctt gcccgcctgc tacccccagc tagtcctggc tatccccggc ccctgctact
     1501 ggggggccag ggtggacagg ttcagctgct tcacatagca ggagagggga cttccattcc
     1561 ccagctggca ggacctcctc agtctctgcc ctccatcacc gactccctct ctgcctttcc
     1621 cctgctggaa cccaagaggc agcagcagct gcaggaacgt ctggaggcgc cggtcatagg
     1681 tctggccgct gccccgccct gtgcctctgc gccaggcctg ttgctcttcc agctctcagc
     1741 agctggggac gtcttctacc agcacctgcg catccagcaa acctccagcc tcagagagcc
     1801 tgatcaccca gcaccagaac ggcctgcatc cagggcggca gcacctccag tggaccaggg
     1861 atccacaccc tcttggacct ctcgggccag tgcccgttgc agccgctggt tggaggcgct
     1921 gatggagttg tcccccacta atccagtgtg ggctgccccc accttctccc accgccgttt
     1981 tctgggccac atggagcggc agaagagcca ggagaccctg gcacagaagc tccaagcagc
     2041 catggccaag gggcagctcc tgcggcctgg ggacctcggt acactcccca aggcagagcc
     2101 accccctgca ccgcagtgta gccagcagga tgagctcact gagcgcttaa ccaaagcctg
     2161 ggaaggccag gcagctgcct ggtggaaaag acatcaagat cagacctccg ggtcccagag
     2221 acaatccaag cggcccaagc gccggactca gctctctagc accttctcct cgttcacaag
     2281 ctacatggac tccccagatg ccagcagtgc ccctcacagc caagacctct ctaactctga
     2341 ggcctgccct cagccaccca ggactccacc ctcccaggag ttaacgcagg agctgtgggc
     2401 ccaaggtgtg cagcatgaac gtcgccagac cctccgggac tacatggcca agctgccact
     2461 tcaggacaat ccaggacctg tggctacacc gccctcccag acctctagcc gccagaccag
     2521 gtctttcagg cagcaaacac ctgtcctctc tggctcccat cctccccgga agaagccacg
     2581 aatgggcttc tgagttgggg aagcatgtct gagaacctag ccttcatcct ggagcactga
     2641 gcttacctat tccagggcag agcctctacc tcccagtgtg cccgtgggaa cttgagcagt
     2701 ttggagccag gctgaagcaa tggggaacaa atctgttttg tatatttggt ggtaggttat
     2761 tcctgagagc tggctgcaga gagagccagg agaccatgca caggaactct gtgtagccat
     2821 ggccaagggc cagccagctc ttctagcctg gggatctgca tatactctcc agggtagagc
     2881 tacccctgca cctcagtgca gcagggttgc tagaaaggag gccattgtgt cagcgttagc
     2941 ctcctgtcct tgaaggtacc tcagcccaag tgcctcctga catggctgtt gtgggtcatt
     3001 tgtgcgacag tccacatagg ttcaataggg gttgacgctt tgactctggg actgaataaa
     3061 cttgtccact gccttgaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     3121 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
