LOCUS       XM_039112967            2418 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TATA-box binding protein associated
            factor, RNA polymerase I subunit B (Taf1b), transcript variant X3,
            mRNA.
ACCESSION   XM_039112967
VERSION     XM_039112967.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039112967.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2418
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2418
                     /gene="Taf1b"
                     /gene_synonym="TAFI63"
                     /note="TATA-box binding protein associated factor, RNA
                     polymerase I subunit B; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 5 ESTs, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 25 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:690450"
                     /db_xref="RGD:1596058"
     CDS             454..2217
                     /gene="Taf1b"
                     /gene_synonym="TAFI63"
                     /codon_start=1
                     /product="TATA box-binding protein-associated factor RNA
                     polymerase I subunit B isoform X3"
                     /protein_id="XP_038968895.1"
                     /db_xref="GeneID:690450"
                     /db_xref="RGD:1596058"
                     /translation="MDVEQMKAFTDRCSQCAAVSWGLTDEGKYYCTSCHNVTDRSEEV
                     VSTAVIPNTKINSISRGLRQRSKHEKGWDWYVCEGFQCILYHQAEALETLGVSPELKN
                     EVLHSFWKRYLQKSKQAYCKNPVRTSGRKAKVLEDNLQSSDWGSDFELLSDTTCPPES
                     GAEFQSDSQTPKPFPATKRSSKSAASVCSGSVDGVEYSERKEKGLLKMTVPRTLALCY
                     LSLLWQRETITLSDLLRFVEEDRIPYINAFKVFPEEMKVYGRDKGIFAVESWPDYEDI
                     YKNMIEVAVFLDLPRFPDITEDCYLHPNTLCMKYLLEVNLPEEMYTLTCQVVKLTGIG
                     EVDFLTFDPIAKMTRTVKHDVQAVAVIVLVLKLLFLLDDKLEWSYSDLAEAYNEGHKE
                     ETPQFDFRKWYQVMKKTFDEKRRKWEEARAKYVWKTKRPLYRSHIDKSVAYKRREMVE
                     NLQKQFSALIGSAPEVERQAPSSFQLNWTGEDTGSPCFHGHSLQGLLISKGQALITKN
                     SLYWLSTHKFCKSYCKHVTTYEESNFSLSYQFILNIFSFLLRIKTSALHEEVSLLEKK
                     LFEKKYNESKRSSRSKKVRRH"
ORIGIN      
        1 ggagagtctg gtttctagga tcagggaaga aaaaaaaaaa atccaaatag aaatccagct
       61 ctagctcaac aatctgagtt ctctacttca aaacattgag aatacatttt gtaaaatcca
      121 gaagcaggaa gtgctagcac acgtctttaa tctcagcact cagaaagcat aggcaggtgg
      181 atctcagtga gttcgaggcc agtttgatct cctgagcaga attccaggac agccacagct
      241 acagaaacaa aattccagaa aacccgtgta ggtctgagct ctgtctctgg ggcctggtct
      301 cggtcctgta ttgcctgctt gcagcctggg tcttgagccc gacaaagaca gcacagaaga
      361 ctcctggaac gcaaaggcag agacagtgtt tcttgccgga gcgctctccc cggctctccc
      421 ggaagcggtg cctgggtagc ggtgtcagca gcgatggacg tggagcagat gaaagcattc
      481 acagaccgct gttctcagtg cgccgctgtc tcctggggcc ttactgatga aggcaaatac
      541 tattgtacct cctgccacaa tgtcacagat cgatccgagg aagtcgtgag cactgcagtt
      601 atccctaaca ccaagatcaa ctccattagc aggggcctga gacagagaag caagcatgag
      661 aaaggctggg attggtacgt gtgtgaaggc ttccagtgca tactttatca ccaagcagaa
      721 gccctggaga ccctcggagt aagcccagaa ctaaagaatg aagtcttgca cagtttttgg
      781 aagcgctacc ttcagaagag caagcaggcc tattgtaaaa acccagttcg cacaagtgga
      841 aggaaagcca aggtattaga agacaatctg cagtcctctg actggggcag tgattttgag
      901 ttgctcagtg acaccacatg tcctcctgaa agtggagcag agttccagtc tgactcccag
      961 actccaaagc ctttccctgc caccaaacga tcatcaaagt cagcagcatc cgtctgttct
     1021 ggatctgttg atggagtgga gtactcagag cggaaggaga aggggctcct gaagatgact
     1081 gtgcccagga cacttgccct ctgctatctg tccttgctct ggcagagaga aacaattaca
     1141 ctttcagacc ttttgaggtt tgttgaagag gaccgtattc catacataaa tgcttttaag
     1201 gtttttccag aggagatgaa agtatatggt cgtgacaaag gcatctttgc tgtcgagtct
     1261 tggcctgact atgaagacat ctataaaaac atgattgaag tcgccgtgtt tttagatttg
     1321 cctcgtttcc cagacataac tgaagactgc tacctccatc ccaacacctt gtgtatgaaa
     1381 tacttactgg aggtcaatct ccctgaggaa atgtacactt taacctgcca agtagtaaag
     1441 ctgactggaa ttggagaagt agattttctg acgtttgacc ctatagctaa aatgacaagg
     1501 acagtcaaac atgatgtgca ggctgtggct gtcatcgtgc ttgtgttgaa gctgctgttt
     1561 ctgctggatg acaagctgga atggtcttac tcagatcttg ctgaagcata taacgaagga
     1621 cacaaagaag aaactccgca gtttgatttc agaaaatggt accaagttat gaagaaaact
     1681 tttgatgaga aaagacgaaa atgggaagaa gcaagggcca agtatgtttg gaaaaccaaa
     1741 aggccactct accgttcaca cattgataag tcagtcgcat ataagagaag agaaatggtg
     1801 gagaatcttc agaaacagtt tagtgccctg attggttcag cacccgaggt ggaaaggcag
     1861 gccccttcaa gttttcagct caactggact ggagaagaca ccggtagccc ttgtttccat
     1921 ggacacagcc tccaggggct cctgatatcg aaaggccagg ccttgataac caagaactcc
     1981 ctgtactggc tcagtaccca caagttctgt aaaagctatt gtaaacatgt gacaacttac
     2041 gaagaatcaa atttttcttt gagttaccag tttatactaa acattttctc cttcttactg
     2101 agaataaaga cctctgctct ccatgaagaa gtgagcctac ttgaaaagaa actttttgaa
     2161 aaaaagtaca atgaatcaaa aaggagctca agatccaaga aagtgagaag acattgagaa
     2221 gccagagggg cttgctctga atggtgcgct attggataat gatgtcttag cactatgttc
     2281 cagggaacta tgtaaagtct attgttggac aggcatacat tttgacaggt gtctttatat
     2341 gcattgtaaa ataggtgaac tttgaattat tttcatgaac actttttttc agaaaattaa
     2401 aatattatat aaatgata
//
