LOCUS       NM_001037204            1534 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Rattus norvegicus TATA-box binding protein associated factor, RNA
            polymerase I subunit A (Taf1a), transcript variant 1, mRNA.
ACCESSION   NM_001037204 XM_341167
VERSION     NM_001037204.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   Knutson,B.A. and Hahn,S.
  TITLE     TFIIB-related factors in RNA polymerase I transcription
  JOURNAL   Biochim Biophys Acta 1829 (3-4), 265-273 (2013)
   PUBMED   22960599
  REMARK    Review article
REFERENCE   2  (bases 1 to 1534)
  AUTHORS   Schneider,D.A.
  TITLE     RNA polymerase I activity is regulated at multiple steps in the
            transcription cycle: recent insights into factors that influence
            transcription elongation
  JOURNAL   Gene 493 (2), 176-184 (2012)
   PUBMED   21893173
  REMARK    Review article
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC107466.1.
            
            On Nov 18, 2005 this sequence version replaced XM_341167.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC107466.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06680423 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q26"
     gene            1..1534
                     /gene="Taf1a"
                     /note="TATA-box binding protein associated factor, RNA
                     polymerase I subunit A"
                     /db_xref="GeneID:360893"
                     /db_xref="RGD:1305698"
     exon            1..76
                     /gene="Taf1a"
                     /inference="alignment:Splign:2.1.0"
     exon            77..210
                     /gene="Taf1a"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..1448
                     /gene="Taf1a"
                     /note="TBP-associated factor 1A; TATA box-binding
                     protein-associated factor 1A; transcription initiation
                     factor SL1/TIF-IB subunit A; TATA box binding protein
                     (Tbp)-associated factor, RNA polymerase I, A"
                     /codon_start=1
                     /product="TATA box-binding protein-associated factor RNA
                     polymerase I subunit A"
                     /protein_id="NP_001032281.1"
                     /db_xref="GeneID:360893"
                     /db_xref="RGD:1305698"
                     /translation="MMSDFSEELTKLAGAEDNPETSEFSKTRMHFPWLQKHIEAVVTG
                     GKKRKDFAQTTSACLSFLQEALLKHQWCRAAEYMHSYLQTLEDSDTYRKQAAPEIIWK
                     LGSEILFYHPKSNVETFSSFADRMKNIGVLNYLKISLQHALYLLHHGMLEDANRNLSE
                     AETWRYGEKSASQEVLIKLVQAYKGLLQHYSWSKKKMELSELDEDDYAYTAKSRNMLS
                     QSSKTSTNICTLIKTPGVWDPFVKSYVEMLEFYGDQDGARELLTNYAYDEKFPSNPNA
                     HVYLYEFLKREKAPRAKLISVLKILHEIVPSHSLMLEFHTLLRKSETEEHRKLGLAVL
                     FEVLDFSGCTKNITAWKYLAKYLKQTLMESHREWVEEEWKSRRNWWPAFHFSFFWAKS
                     DWKADAELACEKAFVAGILLGKGCRYFRYILKQDHETLKKKIKRMKKSVKKYTIVNPG
                     VHT"
     exon            211..380
                     /gene="Taf1a"
                     /inference="alignment:Splign:2.1.0"
     exon            381..494
                     /gene="Taf1a"
                     /inference="alignment:Splign:2.1.0"
     exon            495..693
                     /gene="Taf1a"
                     /inference="alignment:Splign:2.1.0"
     exon            694..824
                     /gene="Taf1a"
                     /inference="alignment:Splign:2.1.0"
     exon            825..983
                     /gene="Taf1a"
                     /inference="alignment:Splign:2.1.0"
     exon            984..1050
                     /gene="Taf1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..1174
                     /gene="Taf1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1175..1329
                     /gene="Taf1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1330..1500
                     /gene="Taf1a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gacacaggca acttcccctc gcccaatcgc gagcctcggc tccggcgcct tcacagacga
       61 ccctccgcgt caccagtttg gaatagatga tgagtgactt cagtgaagaa ctgacaaagc
      121 ttgctggggc tgaggataac ccagaaacgt cagagttctc taagacaaga atgcatttcc
      181 catggcttca gaagcatata gaagcagtgg tgactggagg gaagaagagg aaggattttg
      241 ctcagacgac aagtgcttgt ctaagcttcc tccaagaagc cctgctgaag caccagtggt
      301 gtcgagctgc ggagtacatg cacagttacc tgcagaccct ggaagactca gacacctaca
      361 ggaaacaggc tgcccctgag atcatttgga agcttggaag tgaaattcta ttttaccacc
      421 ccaaaagcaa cgtggagact tttagtagct tcgctgaccg gatgaaaaat attggtgtct
      481 tgaattattt aaagatctcc ttacaacatg cgttgtatct tttacatcat gggatgcttg
      541 aagatgcaaa caggaatcta agtgaggcag agacgtggag atacggtgaa aagtcggctt
      601 ctcaggaagt gttaattaag cttgttcagg cctacaaagg cctcttacag cactactctt
      661 ggtccaagaa gaagatggag ttgtcagagc tcgatgagga tgattatgct tacactgcaa
      721 aatcccggaa catgctcagc cagagcagca agacgtctac aaacatctgt acgctgatta
      781 aaacccctgg ggtttgggat ccttttgtga agagctatgt ggagatgctg gagttctatg
      841 gtgaccaaga tggagcccga gagctgctca ccaattatgc atatgatgag aagttcccgt
      901 caaaccccaa tgcccacgtc tacttatacg agtttctcaa gagagagaag gcgccaaggg
      961 cgaagctcat aagtgttctt aagattttac atgagattgt gccatcccat tcactaatgt
     1021 tagaattcca tacgctgctt agaaagtcag agacagaaga acaccggaaa ctgggcttgg
     1081 ccgtgttatt tgaagtccta gacttctctg gatgcactaa gaacataacg gcttggaaat
     1141 acttggcaaa gtatctgaag cagacgttaa tggaaagcca tcgtgagtgg gttgaagaag
     1201 agtggaagtc caggagaaac tggtggccag cctttcactt cagcttcttt tgggcaaaga
     1261 gtgactggaa ggcagacgct gagctggctt gtgaaaaggc ttttgtagct ggaatccttt
     1321 tagggaaagg ttgtagatac tttcggtata ttttaaaaca agatcatgaa accttgaaaa
     1381 agaaaatcaa gcggatgaag aagtctgtga aaaaatatac tattgtaaat ccaggcgttc
     1441 acacctaggt cttgaactta ttttacagtt gtcactacag tgtagtggtt tgtattttaa
     1501 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//
