LOCUS       NM_001105824            2118 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus TATA-box binding protein associated factor 15
            (Taf15), mRNA.
ACCESSION   NM_001105824 XM_039085548 XM_237792
VERSION     NM_001105824.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Kapeli,K., Pratt,G.A., Vu,A.Q., Hutt,K.R., Martinez,F.J.,
            Sundararaman,B., Batra,R., Freese,P., Lambert,N.J., Huelga,S.C.,
            Chun,S.J., Liang,T.Y., Chang,J., Donohue,J.P., Shiue,L., Zhang,J.,
            Zhu,H., Cambi,F., Kasarskis,E., Hoon,S., Ares,M. Jr., Burge,C.B.,
            Ravits,J., Rigo,F. and Yeo,G.W.
  TITLE     Distinct and shared functions of ALS-associated proteins TDP-43,
            FUS and TAF15 revealed by multisystem analyses
  JOURNAL   Nat Commun 7, 12143 (2016)
   PUBMED   27378374
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Malkowska,M., Kokoszynska,K., Rychlewski,L. and Wyrwicz,L.
  TITLE     Structural bioinformatics of the general transcription factor TFIID
  JOURNAL   Biochimie 95 (4), 680-691 (2013)
   PUBMED   23146842
  REMARK    Review article
REFERENCE   3  (bases 1 to 2118)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 2118)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 2118)
  AUTHORS   Jobert,L., Argentini,M. and Tora,L.
  TITLE     PRMT1 mediated methylation of TAF15 is required for its positive
            gene regulatory function
  JOURNAL   Exp Cell Res 315 (7), 1273-1286 (2009)
   PUBMED   19124016
REFERENCE   6  (bases 1 to 2118)
  AUTHORS   Panagopoulos,I., Mencinger,M., Dietrich,C.U., Bjerkehagen,B.,
            Saeter,G., Mertens,F., Mandahl,N. and Heim,S.
  TITLE     Fusion of the RBP56 and CHN genes in extraskeletal myxoid
            chondrosarcomas with translocation t(9;17)(q22;q11)
  JOURNAL   Oncogene 18 (52), 7594-7598 (1999)
   PUBMED   10602519
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On or before Jun 3, 2021 this sequence version replaced
            XM_039085548.1, NM_001105824.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166769.1, SRR26643284.13795.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-121               JAXUCZ010000010.1  68770430-68770550
            122-161             JAXUCZ010000010.1  68777747-68777786
            162-213             JAXUCZ010000010.1  68780667-68780718
            214-298             JAXUCZ010000010.1  68780824-68780908
            299-401             JAXUCZ010000010.1  68780991-68781093
            402-592             JAXUCZ010000010.1  68782246-68782436
            593-713             JAXUCZ010000010.1  68783712-68783832
            714-748             JAXUCZ010000010.1  68793039-68793073
            749-781             JAXUCZ010000010.1  68793670-68793702
            782-891             JAXUCZ010000010.1  68794828-68794937
            892-1021            JAXUCZ010000010.1  68796937-68797066
            1022-1114           JAXUCZ010000010.1  68798366-68798458
            1115-1196           JAXUCZ010000010.1  68799985-68800066
            1197-1285           JAXUCZ010000010.1  68800173-68800261
            1286-1793           JAXUCZ010000010.1  68800382-68800889
            1794-2118           JAXUCZ010000010.1  68802134-68802458
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q26"
     gene            1..2118
                     /gene="Taf15"
                     /note="TATA-box binding protein associated factor 15"
                     /db_xref="GeneID:287571"
                     /db_xref="RGD:1309595"
     exon            1..121
                     /gene="Taf15"
                     /inference="alignment:Splign:2.1.0"
     CDS             115..1833
                     /gene="Taf15"
                     /note="TAF15 RNA polymerase II, TATA box binding protein
                     (TBP)-associated factor; TATA-binding protein-associated
                     factor 2N-like"
                     /codon_start=1
                     /product="TATA-binding protein-associated factor 2N"
                     /protein_id="NP_001099294.2"
                     /db_xref="GeneID:287571"
                     /db_xref="RGD:1309595"
                     /translation="MSDSGSYSQSGGEQQSYSSYGNQGSQGYGQTQQSYSGYGQTTDS
                     SYGQNYGGYSGYGQNQSGYSQSYGSYENQKQSSYGQQSYNNQGQQNTESSGGQGGRAP
                     SYGQSDYGQQDSYDQQSGYDQHQGSYDEQSNYQQHDSYNQNQQSYHPQRENYSHHTQD
                     DRRDMSRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYGP
                     RPDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKD
                     TGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRG
                     RGGYRGRGGFQGRGGDPKNGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDF
                     RGRGYGGERGFRGRGGRGGDRGGYGADRSGGGYGGDRSGGSYGADRSGGGYGGDRSGG
                     GYGGDRGGGYGGDRGGYGGDRGGSYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRS
                     RGAYGGDRGGGSGGYGGDRSGGYGGDRGGGYGGDRGGYGGDRGGYGGKMGGRNDYRND
                     QRNRPY"
     exon            122..161
                     /gene="Taf15"
                     /inference="alignment:Splign:2.1.0"
     exon            162..213
                     /gene="Taf15"
                     /inference="alignment:Splign:2.1.0"
     exon            214..298
                     /gene="Taf15"
                     /inference="alignment:Splign:2.1.0"
     exon            299..401
                     /gene="Taf15"
                     /inference="alignment:Splign:2.1.0"
     exon            402..592
                     /gene="Taf15"
                     /inference="alignment:Splign:2.1.0"
     exon            593..713
                     /gene="Taf15"
                     /inference="alignment:Splign:2.1.0"
     exon            714..748
                     /gene="Taf15"
                     /inference="alignment:Splign:2.1.0"
     exon            749..781
                     /gene="Taf15"
                     /inference="alignment:Splign:2.1.0"
     exon            782..891
                     /gene="Taf15"
                     /inference="alignment:Splign:2.1.0"
     exon            892..1021
                     /gene="Taf15"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..1114
                     /gene="Taf15"
                     /inference="alignment:Splign:2.1.0"
     exon            1115..1196
                     /gene="Taf15"
                     /inference="alignment:Splign:2.1.0"
     exon            1197..1285
                     /gene="Taf15"
                     /inference="alignment:Splign:2.1.0"
     exon            1286..1793
                     /gene="Taf15"
                     /inference="alignment:Splign:2.1.0"
     exon            1794..2118
                     /gene="Taf15"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggcctcagc ccgccgcgcc gccctcagag cagcttcagc agccgcgccg cctggctttt
       61 cgttttcctt gttctccgcg ggccgtgggg ggctccgcgc cgcggctgtt agtcatgtcg
      121 gattctggaa gttacagtca gtctgggggt gagcagcaaa gttattcttc ctatggaaat
      181 caaggcagtc aaggctatgg acagacacaa caaagctatt ctggctatgg gcaaacgact
      241 gattcttcat atggacaaaa ctatggtggt tactccggtt atggacaaaa tcaatcaggt
      301 tattcacagt cctatggtag ttatgagaat caaaagcaga gttcctatgg ccagcagtca
      361 tataataacc agggacaaca aaacacggaa tcatcaggag gtcaaggtgg aagagcacct
      421 tcatatggcc agtcagacta tggtcagcaa gattcttatg accagcagtc aggttatgat
      481 cagcaccaag gctcatatga tgagcagtcc aattatcagc agcatgattc ctataatcaa
      541 aaccagcagt cttaccatcc acaaagggaa aactatagcc accacacaca agatgaccgt
      601 cgtgatatga gtaggtatgg agaagataat agaggatatg gcgggtcaca gggaggaggt
      661 agagggcgtg ggggatatga caaggatgga agaggtccta tgacaggatc aagtggtggt
      721 gaccgcggtg gcttcaaaaa ttttggtggt cacagggatt atggacccag accagatgct
      781 gattcagagt ctgataattc agataacaac acaatctttg tgcaaggact tggggagggt
      841 gtgtctacag atcaagtggg agagttcttt aagcaaatag gaattatcaa gactaacaaa
      901 aagactggaa aaccaatgat aaatctttac acagacaaag acacaggaaa gccaaaagga
      961 gaagcaacag tgtcatttga tgaccctcca tcagctaagg cagccattga ttggtttgat
     1021 ggaaaagaat tccatggaaa catcattaaa gtgtcatttg ccacgagaag gcctgaattc
     1081 atgagaggcg gtggaagtgg aggtggacgg cgaggtcgtg gaggatatag aggccgtgga
     1141 ggttttcagg ggcgaggtgg agaccccaaa aatggggact gggtttgccc caatccgtca
     1201 tgtgggaata tgaattttgc tcgaaggaat tcctgtaatc agtgcaatga gccaagacca
     1261 gaggactctc gtccctcagg gggagatttc cgggggagag gctacggtgg agaaaggggc
     1321 ttcagaggtc gtgggggcag aggtggagac cgaggtggct atggtgcaga caggagtggg
     1381 ggtggttatg gtggagatag gagtggtggt agctatggtg cagacagaag tgggggtggt
     1441 tatggtggag acaggagtgg aggtggctat ggtggggata gaggaggtgg ctatggagga
     1501 gacagaggtg gttatggtgg agaccgaggg ggcagctatg gaggagacag aggtggctat
     1561 ggaggagaca gaggtggcta tggaggagat cgaggaggat atggaggaga tcgaggagga
     1621 tacggaggag accgcagccg gggggcctat ggaggagacc gtggtggtgg cagtggaggc
     1681 tatggtggag accgaagtgg tggctacgga ggagaccgag gtgggggtta tggaggcgac
     1741 agaggtggct atggaggaga ccgaggtggc tatggaggca aaatgggagg aagaaatgac
     1801 tacagaaatg atcagcgcaa ccgaccgtac tgatgactgt ttccaatact cccttgtctc
     1861 tgacatgatc catggggaat tgtcagagtg tgcctgctgc tttcctcatg gcctcttgag
     1921 tagtgaaatt gacatttggg tttttatttg ggtgggaggg ctggggacag ttttccttta
     1981 gaaatgtcca ttaaaatttt cccttttagt ttcccacctt ctctttccca acccttaaag
     2041 ctaaatgcgt tgtaaaatat tgccaaaatg gaaagtgttt tgtaatactg caataaaagc
     2101 tgcttgtttt ttgtggac
//
