LOCUS       NM_001303616            1363 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus TATA-box binding protein associated factor 13
            (Taf13), transcript variant 1, mRNA.
ACCESSION   NM_001303616 XM_006233151
VERSION     NM_001303616.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1363)
  AUTHORS   Malkowska,M., Kokoszynska,K., Rychlewski,L. and Wyrwicz,L.
  TITLE     Structural bioinformatics of the general transcription factor TFIID
  JOURNAL   Biochimie 95 (4), 680-691 (2013)
   PUBMED   23146842
  REMARK    Review article
REFERENCE   2  (bases 1 to 1363)
  AUTHORS   Tatarakis,A., Margaritis,T., Martinez-Jimenez,C.P., Kouskouti,A.,
            Mohan,W.S. 2nd, Haroniti,A., Kafetzopoulos,D., Tora,L. and
            Talianidis,I.
  TITLE     Dominant and redundant functions of TFIID involved in the
            regulation of hepatic genes
  JOURNAL   Mol Cell 31 (4), 531-543 (2008)
   PUBMED   18722179
REFERENCE   3  (bases 1 to 1363)
  AUTHORS   Mengus,G., May,M., Jacq,X., Staub,A., Tora,L., Chambon,P. and
            Davidson,I.
  TITLE     Cloning and characterization of hTAFII18, hTAFII20 and hTAFII28:
            three subunits of the human transcription factor TFIID
  JOURNAL   EMBO J 14 (7), 1520-1531 (1995)
   PUBMED   7729427
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1, FM135814.1, FM054549.1 and AW144407.1.
            
            On Jan 13, 2015 this sequence version replaced XM_006233151.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. It encodes the protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166866.1, DY316940.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-26                JAXUCZ010000002.1  198893332-198893357
            27-745              FM135814.1         1-719
            746-1062            FM054549.1         234-550
            1063-1362           AW144407.1         1-300               c
            1363-251714070      JAXUCZ010000002.1  1-251712708
FEATURES             Location/Qualifiers
     source          1..1363
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..1363
                     /gene="Taf13"
                     /note="TATA-box binding protein associated factor 13"
                     /db_xref="GeneID:310784"
                     /db_xref="RGD:1305398"
     exon            1..70
                     /gene="Taf13"
                     /inference="alignment:Splign:2.1.0"
     CDS             44..418
                     /gene="Taf13"
                     /note="TAF13 RNA polymerase II, TATA box binding protein
                     (TBP)-associated factor"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit
                     13"
                     /protein_id="NP_001290545.1"
                     /db_xref="GeneID:310784"
                     /db_xref="RGD:1305398"
                     /translation="MADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFG
                     DDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKD
                     LLTMNEELKRARKAFDEANYGS"
     exon            71..149
                     /gene="Taf13"
                     /inference="alignment:Splign:2.1.0"
     exon            150..247
                     /gene="Taf13"
                     /inference="alignment:Splign:2.1.0"
     exon            248..1363
                     /gene="Taf13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagccgccct tgggcgggct cagaaggctg gcgggctgct agcatggcag atgaggagga
       61 agatcccacc tttgaggagg aaaatgaaga aattggagga ggagcagaag gtggccaggg
      121 gaagagaaag agacttttct ctaaagaact gcgctgtatg atgtatgggt ttggggatga
      181 ccagaatcct tatacggagt cagtggatat tctcgaagac cttgtcatag agttcatcac
      241 tgaaatgact cataaggcaa tgtcaattgg aagacaaggt cgagtgcaag ttgaagatat
      301 tgtcttccta attcgaaagg atccgaggaa gttcgctaga gttaaagact tactaactat
      361 gaatgaagag ttgaaacggg ctagaaaagc tttcgacgaa gccaactatg gatcttgaca
      421 ccgtttgtga tgcccgggat tttgatattt tctgtggaaa ccatacattg tatttgttgt
      481 ctgcagtaat atcgtgatag ctaggcatgc aatgacagag gcctttgatt ttagatttgt
      541 aacgtgagcc ttttgttgcc tgtctttatc tgaccatatt tgagttgctt actggccttg
      601 aataactcct aacttaaagt attgcaaacc atgcagttcc acccgaaagg gggaagtagt
      661 acttattctt caggtagaca tgtgcattcc aagctgtgta catcgctgca taaaatgcaa
      721 tctaaatgtc ctcttgattt tatgaatggt agggcttgtg ctttatgaat ctcaagtttt
      781 tagacgacag tagtgggaga agctattaaa gataatgaac tggtttgtgt ggtttttttt
      841 ttttttttag aaaactaaat tcttgtcaga atgtcttaat cgatcatttg ttttaatatt
      901 cttttctaaa gaacactttt ttaaagagaa actagtattt gctaagcatt agtaatctcg
      961 tcgtcttcct tgatgactgt aatgcttcca aaaacaaatg ccttcagccg taggaatggc
     1021 acagcttgtg aagcagaggc caggacaggt attctgggtt gtgttccact gatatacaca
     1081 taaatacttt cattgtgaga atgtatggtt gattaaacct gtatgtgggt gtgcaagcca
     1141 tttttatagt tcaagatatg cagactttgt gtgtagttca cttactgcat taaattattc
     1201 tgcttagctt ataatgagga ttaaaattgc attcaaagag gttactgact gtgtctctga
     1261 aacctgctgg tattccttaa cgtctctaac tcaatgcttg gggaaatact acctgtttaa
     1321 tctactgatc caaggaataa agaatgagga attaaacaca cca
//
