LOCUS       NM_001115036            1290 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus TATA-box binding protein associated factor 12
            (Taf12), mRNA.
ACCESSION   NM_001115036 XM_001065010
VERSION     NM_001115036.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1290)
  AUTHORS   Malkowska,M., Kokoszynska,K., Rychlewski,L. and Wyrwicz,L.
  TITLE     Structural bioinformatics of the general transcription factor TFIID
  JOURNAL   Biochimie 95 (4), 680-691 (2013)
   PUBMED   23146842
  REMARK    Review article
REFERENCE   2  (bases 1 to 1290)
  AUTHORS   Knutson,B.A. and Hahn,S.
  TITLE     TFIIB-related factors in RNA polymerase I transcription
  JOURNAL   Biochim Biophys Acta 1829 (3-4), 265-273 (2013)
   PUBMED   22960599
  REMARK    Review article
REFERENCE   3  (bases 1 to 1290)
  AUTHORS   Spedale,G., Timmers,H.T. and Pijnappel,W.W.
  TITLE     ATAC-king the complexity of SAGA during evolution
  JOURNAL   Genes Dev 26 (6), 527-541 (2012)
   PUBMED   22426530
  REMARK    Review article
REFERENCE   4  (bases 1 to 1290)
  AUTHORS   Kamileri,I., Karakasilioti,I., Sideri,A., Kosteas,T., Tatarakis,A.,
            Talianidis,I. and Garinis,G.A.
  TITLE     Defective transcription initiation causes postnatal growth failure
            in a mouse model of nucleotide excision repair (NER) progeria
  JOURNAL   Proc Natl Acad Sci U S A 109 (8), 2995-3000 (2012)
   PUBMED   22323595
REFERENCE   5  (bases 1 to 1290)
  AUTHORS   Schneider,D.A.
  TITLE     RNA polymerase I activity is regulated at multiple steps in the
            transcription cycle: recent insights into factors that influence
            transcription elongation
  JOURNAL   Gene 493 (2), 176-184 (2012)
   PUBMED   21893173
  REMARK    Review article
REFERENCE   6  (bases 1 to 1290)
  AUTHORS   Shao,H., Revach,M., Moshonov,S., Tzuman,Y., Gazit,K., Albeck,S.,
            Unger,T. and Dikstein,R.
  TITLE     Core promoter binding by histone-like TAF complexes
  JOURNAL   Mol Cell Biol 25 (1), 206-219 (2005)
   PUBMED   15601843
REFERENCE   7  (bases 1 to 1290)
  AUTHORS   Guermah,M., Ge,K., Chiang,C.M. and Roeder,R.G.
  TITLE     The TBN protein, which is essential for early embryonic mouse
            development, is an inducible TAFII implicated in adipogenesis
  JOURNAL   Mol Cell 12 (4), 991-1001 (2003)
   PUBMED   14580349
REFERENCE   8  (bases 1 to 1290)
  AUTHORS   Martinez,E., Palhan,V.B., Tjernberg,A., Lymar,E.S., Gamper,A.M.,
            Kundu,T.K., Chait,B.T. and Roeder,R.G.
  TITLE     Human STAGA complex is a chromatin-acetylating transcription
            coactivator that interacts with pre-mRNA splicing and DNA
            damage-binding factors in vivo
  JOURNAL   Mol Cell Biol 21 (20), 6782-6795 (2001)
   PUBMED   11564863
REFERENCE   9  (bases 1 to 1290)
  AUTHORS   Ogryzko,V.V., Kotani,T., Zhang,X., Schiltz,R.L., Howard,T.,
            Yang,X.J., Howard,B.H., Qin,J. and Nakatani,Y.
  TITLE     Histone-like TAFs within the PCAF histone acetylase complex
  JOURNAL   Cell 94 (1), 35-44 (1998)
   PUBMED   9674425
REFERENCE   10 (bases 1 to 1290)
  AUTHORS   Wieczorek,E., Brand,M., Jacq,X. and Tora,L.
  TITLE     Function of TAF(II)-containing complex without TBP in transcription
            by RNA polymerase II
  JOURNAL   Nature 393 (6681), 187-191 (1998)
   PUBMED   9603525
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473968.1.
            
            On Mar 2, 2008 this sequence version replaced XM_001065010.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158610.1, FQ225384.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132263
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1290
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1290
                     /gene="Taf12"
                     /note="TATA-box binding protein associated factor 12"
                     /db_xref="GeneID:682902"
                     /db_xref="RGD:1592841"
     exon            1..76
                     /gene="Taf12"
                     /inference="alignment:Splign:2.1.0"
     exon            77..328
                     /gene="Taf12"
                     /inference="alignment:Splign:2.1.0"
     CDS             161..646
                     /gene="Taf12"
                     /note="TAF12 RNA polymerase II, TATA box binding protein
                     (TBP)-associated factor"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit
                     12"
                     /protein_id="NP_001108508.1"
                     /db_xref="GeneID:682902"
                     /db_xref="RGD:1592841"
                     /translation="MNQFGPSALINLSSFSSIKPEPASTPPQGSMANSTTVGKMPGTP
                     GTGGRLSPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQL
                     ARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTK
                     K"
     exon            329..406
                     /gene="Taf12"
                     /inference="alignment:Splign:2.1.0"
     exon            407..521
                     /gene="Taf12"
                     /inference="alignment:Splign:2.1.0"
     exon            522..610
                     /gene="Taf12"
                     /inference="alignment:Splign:2.1.0"
     exon            611..1290
                     /gene="Taf12"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtcggaccg gctgctgaga cgaaagcttc actggggcag tctccgcata tcatggggag
       61 atagacgctg ctgcctttga ttggccttgg tcctcacagc tcaaaaaaga agcaggatct
      121 tgataagctc tatgagctga agtgtaaagc tggacagatt atgaaccagt ttggcccctc
      181 agcgctaatc aacctctcca gcttctcctc tataaaacca gagccagcca gcaccccacc
      241 acaaggctcc atggccaata gcaccaccgt gggaaagatg ccgggcactc ctggcacagg
      301 tggtcgtctc agccctgaaa acaaccaggt attgaccaag aagaagttac aagacctagt
      361 aagagaagtg gatcctaacg agcagctgga tgaagatgtg gaagagatgc tgctgcagat
      421 cgctgatgat tttatcgaga gtgtggtgac agctgcctgc cagctcgctc ggcaccgcaa
      481 gtccagcacc ctggaggtga aagatgtcca gctgcatcta gagcgccaat ggaacatgtg
      541 gatcccagga tttggctctg aggagatccg gccctacaaa aaagcttgta ccacagaagc
      601 tcacaaacag agaatggcgt tgatccggaa aacaaccaag aaatagcaca gggaacagtc
      661 aggaatggac gacatgtatt tgcagatact tgagctgaga cctcagccat ctcatccttg
      721 gatttttttt taaatgcttt acagagaagc atatattttt tattaacagt gcagcaatat
      781 ctataatgac tgagaagatc tgccaaaaga ataaagcctc ctaccccacc ttctggtccc
      841 ttttccctgc cgtctcaaag agaagcagtg catcccggag aagattttgc ccgtggttta
      901 ttatataagt gagtggctgc aggaagagcg ttttggtcgt gctgggtgag acagtgttag
      961 tagatttgta gagggtttgt ctcctccttc cccatccctg tactttgtaa tgtcagtgtt
     1021 tctatgacta tgaacttgat ttgcttttcc agaataaagg agttattaat tgaagacaca
     1081 gggtgcatag ctgagagcct ttgaaatgcc agggtccctg cagtcagcag gtggcagcac
     1141 aggggtgatc gtgttagagg aacaggcagg gatttcccac cattttactc caaaggaaca
     1201 agccagcagt aggagttgga gcactttctc tgtcaccaga cacggtgaac tctgctaagc
     1261 cccaaaataa acaagcattc tagttttgat
//
