LOCUS       XM_039098680            1783 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TATA-box binding protein associated
            factor 11 (Taf11), transcript variant X1, mRNA.
ACCESSION   XM_039098680
VERSION     XM_039098680.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1783
                     /gene="Taf11"
                     /note="TATA-box binding protein associated factor 11;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 mRNAs, 22 ESTs, 7 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 85 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:309638"
                     /db_xref="RGD:1305626"
     CDS             672..1307
                     /gene="Taf11"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit 11
                     isoform X1"
                     /protein_id="XP_038954608.1"
                     /db_xref="GeneID:309638"
                     /db_xref="RGD:1305626"
                     /translation="MDNLGESPTDKAGEPGESEETRATPGAPVSADTEGIPEETDQVG
                     DADSKEAAAEESELKSQDVSDVTAAEREDPSLLTPAAKKLKLDTKDKKEKKQKVDEDE
                     IQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKV
                     FVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSKHKKITFF"
ORIGIN      
        1 ccccttgccc acctagtggg cggggctcgg cgccgccttg caggtgaccc agggtggcag
       61 agtggaagtc cgggcgtgca gagtggagcc tggcgcagac gcggttcacg cccagcgaac
      121 ccgcccattc gacaggatac tagctagccc tgttctgacg cgaggcaggt ggccaatatt
      181 tgagacaatg aatgaaattc aaggttctgg ctacgttcaa cgagttggct acgttctgtt
      241 ggcactagat agagatgctt gcgaaacaga aggtaagcct aagcagttcc ctggtggaca
      301 caagccggtg gtctcagttc ttcagaaaat acgaggttgg gtcgctgccg gaagttgctc
      361 agtccaaggc aacaacaggg acgaagtttt ctccctgttc cctcgacttt gcgctgaagg
      421 agtcaagtta aagaaggatt cattggcatt gcattcccag gaaggagaag aaaaagaagt
      481 ctctcgtcag tttacgtgaa gcccctgagc catgaacgcg cttctgaaaa tgacccctcc
      541 caggagccgt gggcgtgacg tcatcgcggc gcgacgtcaa agccttaagc accagctctg
      601 gggcacagat tgctgaccct cactccttcg cccagtggta ctgtcatcgc ctctgacccc
      661 cttctatcgc gatggacaac cttggggagt cgcccacgga caaagccggg gagccagggg
      721 agtcagagga gacgagggct actcctgggg ccccggtgtc cgccgacact gagggaatcc
      781 cggaggaaac cgaccaggtt ggagacgcgg actcgaaaga agccgcagcg gaggaaagcg
      841 agctcaagag tcaggatgtc tcagacgtaa cagcagctga gagggaagac ccatctttac
      901 ttactcctgc agccaaaaag ctgaaattag acaccaagga caagaaggag aagaagcaga
      961 aggtggacga agacgagatt cagaagatgc aaatcctggt ctcgtctttc tctgaggagc
     1021 agctgaaccg ttatgaaatg tatcgccggt cagctttccc taaggcggcc atcaagcggc
     1081 tgatccagtc catcactggc acgtctgtgt cccagaatgt tgtcattgcc atgtctggga
     1141 tctctaaagt ttttgtcggg gaggtggtag aggaggccct ggatgtgtgt gagaaatggg
     1201 gagaaatgcc acccctgcag cccaagcaca tgagggaggc cgtccggagg ttgaagtcca
     1261 aggggcaaat ccccaactca aagcacaaga aaatcacctt cttctagatc taacggagac
     1321 tgttgcaggc tcatcaccgc tgggcttctg tgctgaggcg ttgttggcgg cgtgccagga
     1381 cgcatgatgc tgactttaat gtttctgttc cacctgcaag gcatgcagtg ggactcagac
     1441 ttcagtcagt cacagactat cctcgggcat ggtgaagact ctttgctagt ttgaagaaat
     1501 atacaggggc cattagtatc ttctggagag ggaggtggtt tcagagaaaa acaagagact
     1561 ctaatggctt cacattgaag cctaaagttg ctaagattca ggttgtttct tgctctggat
     1621 ttcgaaacat aaacttgcaa tcatctgccg tgtagtattt caggttctcc tgtgtattgt
     1681 gtgagggatc ggtaaacttt tccaacctgt aggaaagttt attttatttt gttgaagaca
     1741 aaactcattg ttcttccaat aaaacttggt ttgttttttt ttc
//
