LOCUS       NM_001134735             869 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus TATA-box binding protein associated factor 10
            (Taf10), mRNA.
ACCESSION   NM_001134735
VERSION     NM_001134735.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 869)
  AUTHORS   Iturbide A, Pascual-Reguant L, Fargas L, Cebria JP, Alsina B,
            Garcia de Herreros A and Peiro S.
  TITLE     LOXL2 Oxidizes Methylated TAF10 and Controls TFIID-Dependent Genes
            during Neural Progenitor Differentiation
  JOURNAL   Mol Cell 58 (5), 755-766 (2015)
   PUBMED   25959397
REFERENCE   2  (bases 1 to 869)
  AUTHORS   Malkowska M, Kokoszynska K, Rychlewski L and Wyrwicz L.
  TITLE     Structural bioinformatics of the general transcription factor TFIID
  JOURNAL   Biochimie 95 (4), 680-691 (2013)
   PUBMED   23146842
  REMARK    Review article
REFERENCE   3  (bases 1 to 869)
  AUTHORS   Spedale G, Timmers HT and Pijnappel WW.
  TITLE     ATAC-king the complexity of SAGA during evolution
  JOURNAL   Genes Dev 26 (6), 527-541 (2012)
   PUBMED   22426530
  REMARK    Review article
REFERENCE   4  (bases 1 to 869)
  AUTHORS   Kamileri I, Karakasilioti I, Sideri A, Kosteas T, Tatarakis A,
            Talianidis I and Garinis GA.
  TITLE     Defective transcription initiation causes postnatal growth failure
            in a mouse model of nucleotide excision repair (NER) progeria
  JOURNAL   Proc Natl Acad Sci U S A 109 (8), 2995-3000 (2012)
   PUBMED   22323595
REFERENCE   5  (bases 1 to 869)
  AUTHORS   Tatarakis A, Margaritis T, Martinez-Jimenez CP, Kouskouti A, Mohan
            WS 2nd, Haroniti A, Kafetzopoulos D, Tora L and Talianidis I.
  TITLE     Dominant and redundant functions of TFIID involved in the
            regulation of hepatic genes
  JOURNAL   Mol Cell 31 (4), 531-543 (2008)
   PUBMED   18722179
REFERENCE   6  (bases 1 to 869)
  AUTHORS   Ogryzko VV, Kotani T, Zhang X, Schiltz RL, Howard T, Yang XJ,
            Howard BH, Qin J and Nakatani Y.
  TITLE     Histone-like TAFs within the PCAF histone acetylase complex
  JOURNAL   Cell 94 (1), 35-44 (1998)
   PUBMED   9674425
REFERENCE   7  (bases 1 to 869)
  AUTHORS   Wieczorek E, Brand M, Jacq X and Tora L.
  TITLE     Function of TAF(II)-containing complex without TBP in transcription
            by RNA polymerase II
  JOURNAL   Nature 393 (6681), 187-191 (1998)
   PUBMED   9603525
REFERENCE   8  (bases 1 to 869)
  AUTHORS   Verrier CS, Roodi N, Yee CJ, Bailey LR, Jensen RA, Bustin M and
            Parl FF.
  TITLE     High-mobility group (HMG) protein HMG-1 and TATA-binding
            protein-associated factor TAF(II)30 affect estrogen
            receptor-mediated transcriptional activation
  JOURNAL   Mol Endocrinol 11 (8), 1009-1019 (1997)
   PUBMED   9212049
REFERENCE   9  (bases 1 to 869)
  AUTHORS   Mengus G, May M, Jacq X, Staub A, Tora L, Chambon P and Davidson I.
  TITLE     Cloning and characterization of hTAFII18, hTAFII20 and hTAFII28:
            three subunits of the human transcription factor TFIID
  JOURNAL   EMBO J 14 (7), 1520-1531 (1995)
   PUBMED   7729427
REFERENCE   10 (bases 1 to 869)
  AUTHORS   Jacq X, Brou C, Lutz Y, Davidson I, Chambon P and Tora L.
  TITLE     Human TAFII30 is present in a distinct TFIID complex and is
            required for transcriptional activation by the estrogen receptor
  JOURNAL   Cell 79 (1), 107-117 (1994)
   PUBMED   7923369
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC168203.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168203.1, CK471009.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-869               BC168203.1         1-869
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q32"
     gene            1..869
                     /gene="Taf10"
                     /note="TATA-box binding protein associated factor 10"
                     /db_xref="GeneID:293345"
                     /db_xref="RGD:1305907"
     exon            1..247
                     /gene="Taf10"
                     /inference="alignment:Splign:2.1.0"
     CDS             16..672
                     /gene="Taf10"
                     /note="TAF10 RNA polymerase II, TATA box binding protein
                     (TBP)-associated factor"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit
                     10"
                     /protein_id="NP_001128207.1"
                     /db_xref="GeneID:293345"
                     /db_xref="RGD:1305907"
                     /translation="MSCSGSGADPEAAPACAASVAGPAPPVSAPAALPTSTAAESKAS
                     PAGTAGGPGAGVATAGTGPVAARAGEPAERRGPASVAAGGAAPPEGAMSNGVYALPSA
                     ANGEVKPVVSSTPLVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQ
                     KFISDIANDALQHCKMKGTASGSSRSKSKDRKYTLTMEDLTPALSEYGINVKKPHYFT
                     "
     exon            248..402
                     /gene="Taf10"
                     /inference="alignment:Splign:2.1.0"
     exon            403..467
                     /gene="Taf10"
                     /inference="alignment:Splign:2.1.0"
     exon            468..582
                     /gene="Taf10"
                     /inference="alignment:Splign:2.1.0"
     exon            583..752
                     /gene="Taf10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tttcccacca gccccatgag ctgcagcggc tccggcgcgg accccgaggc ggcgccagcc
       61 tgtgccgcct cggtcgcggg tccggcgccc ccggtgtccg ctcccgctgc gctgcccact
      121 agcacggccg cggagagcaa agccagcccc gcggggacag cagggggccc tggagctgga
      181 gtcgccactg caggcacggg ccccgtggcg gcacgggcag gggagcccgc ggagcggcgc
      241 ggaccggctt cggtggcagc aggcggcgcg gctccccctg agggggcaat gtctaacggg
      301 gtttacgccc taccgagcgc ggccaacgga gaagtgaagc ccgtagtgtc cagcacacca
      361 ctagtggact tcttgatgca gttggaggat tatacaccta cgatcccgga tgcagtgact
      421 ggttactacc tgaaccgtgc tggctttgaa gcttcagacc cacgcataat tcggctcatc
      481 tcactagctg cccagaaatt catctcagat attgccaatg atgccctaca gcactgcaaa
      541 atgaagggta cagcctctgg cagctcccgg agcaagagca aggatcgcaa gtacacccta
      601 accatggagg acttgacccc tgccctcagc gagtatggca tcaatgtgaa gaagccgcac
      661 tacttcacct gagccaccca acccagatgt atttgtcttc ccctctgtcc ccacatgagc
      721 ctgttttcat aataaacttt attgtgacag gcaaaaaaaa aaaaaaaaaa aaaaaaaaaa
      781 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
      841 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//
