LOCUS       XM_039100564            6262 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus TGF-beta activated kinase 1 (MAP3K7)
            binding protein 3 (Tab3), transcript variant X1, mRNA.
ACCESSION   XM_039100564
VERSION     XM_039100564.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086039) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6262
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..6262
                     /gene="Tab3"
                     /note="TGF-beta activated kinase 1 (MAP3K7) binding
                     protein 3; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, 50 long SRA reads"
                     /db_xref="GeneID:317546"
                     /db_xref="RGD:1594527"
     CDS             137..2314
                     /gene="Tab3"
                     /codon_start=1
                     /product="TGF-beta-activated kinase 1 and MAP3K7-binding
                     protein 3 isoform X1"
                     /protein_id="XP_038956492.1"
                     /db_xref="GeneID:317546"
                     /db_xref="RGD:1594527"
                     /translation="MMDVTANVVNPRVAQHFKLLSCNNCKMSPGFGMRKLGVESQCSL
                     NNNNLEACCRALSQESSKYLYMEYHSPEDNRMNRNRLLHINLGIHSPSSYHPGDGAHL
                     NGGRTLVHSSSDGHIDPQHTAGKQLICLVQEPHSAPAVVAATPNYNPFFMNEQTRSAA
                     TPPSQPPQQPSAMQTGMNPSAMQGPSPPPPPSYMHIPRYSTNPITVTVSQNLPSGQTV
                     PRALQILPQIPSNLYGSPGSIYIRPTSQSSSGRQTPQNAPWQSSPQGPVPHYSQRPLP
                     VYPHQQNYQPSQYSPKQQQIPQSVYHSPPPSQCPSPFSSPQHQVQPPQLGHPSSHVFM
                     PPSPSTTPPHLYQQGPPSYQKPGSHSVAYLPYAASSLPKGSMKKIEITVEPSQRPGTA
                     ITRSPSPISNQPSPRNQHSLYTATTPPSSSPSRGISSQPKPPFSVNPVYITYTQPTGP
                     SCAPSPSPRVIPNPTTVFKITVGRATTENLLNLVDQEERSAAPEPIQPISVIPGSGGE
                     KGNHKYQRSSSSGSDDYAYTQALLLHQRARMERLAKQLKLEKEELERLKAEVNSMEHD
                     LMQRRLRRVSCTTTTPTPEEMTRLRSMNRQLQINVDCTLKEVDLLQSRGNFDPKAMNN
                     FYDHIEPGPVVPPKPSKKDSSDSCAIERKARRISVTSKAPADIHESQAAATEEHLSGC
                     RQSPRTQPRDEDYEGAPWNCDSCTFLNHPALNRCEQCEMPRYT"
     polyA_site      6262
                     /gene="Tab3"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 agttgaccac cattgactct ggcatggcgc aaagcagtcc acagcttgat attcaggttc
       61 tccatgatct tcgacaacgt tttcctgaaa ttccagaggg tgtggtatct cagtgcatgt
      121 tacaggttaa acattaatga tggatgttac agcaaatgtg gtgaatccaa gagtagcaca
      181 acattttaag ttgttgagct gcaacaactg taaaatgagt cctggatttg gaatgagaaa
      241 acttggggtt gagtcacaat gttcattaaa taacaacaat ctagaagcct gttgtcgagc
      301 cctttcccag gagagcagca aatacttgta tatggaatac catagtccag aagacaatag
      361 aatgaataga aatcgccttt tgcatattaa tctgggtatc cattctccta gtagctacca
      421 cccaggagat ggagctcacc ttaatggtgg tcgaacactg gtacatagct caagtgatgg
      481 acatattgat cctcagcata cagcaggtaa acagctgata tgtttagttc aggaaccaca
      541 ctcagctcca gctgttgtgg ctgctacacc caactataat ccatttttta tgaatgaaca
      601 gaccagaagt gcagctactc cgccttcaca gccacctcag cagccatctg ccatgcaaac
      661 aggaatgaat ccatccgcta tgcaaggtcc ttcaccacca ccaccaccat cctacatgca
      721 catacctcgc tatagtacaa atccaattac tgttacagta tcccagaacc ttccttctgg
      781 acagactgta ccaagagctt tacagattct tccacaaatt ccaagcaatc tctatggatc
      841 tcctggttct atttatatta gaccgacatc tcagagttca tcaggaagac agactcctca
      901 gaatgctcca tggcagtcct caccacaagg cccagtgcct cattacagcc agcgtccttt
      961 acctgtttat ccacatcaac agaactatca accttctcag tattctccca aacaacagca
     1021 gattcctcag tcagtttacc attcaccgcc tccttctcag tgtccttccc cctttagctc
     1081 tccacagcat caagtacaac caccccagct gggccaccca agttctcatg tgttcatgcc
     1141 acctagtcct tcaactactc caccccacct atatcaacaa ggacctccta gttatcagaa
     1201 accaggaagt cattcagtag cctatctccc ttatgcagca tctagcttac ccaaaggttc
     1261 catgaagaag atagaaatta cagttgaacc ttctcaaaga cctgggacag caataactag
     1321 aagtccgtca cccatcagta atcaaccatc tccaaggaac cagcactcac tgtatacagc
     1381 caccacgcca ccttcaagtt ctccttcaag agggatatct agtcaaccaa aacctccatt
     1441 tagtgttaat cctgtgtata ttacatatac acagccaact ggaccttcat gtgctccatc
     1501 accatctcct cgggtgatac caaacccaac tacagttttt aaaattactg taggccgagc
     1561 aacaactgaa aaccttttga atttagtgga ccaagaagaa cgctctgcag caccagaacc
     1621 tattcagcct atttcagtga taccaggctc tgggggagaa aagggaaacc acaagtatca
     1681 aaggagttct agttctggat cagacgacta tgcctataca caagccttgc tgttacatca
     1741 gcgagcaaga atggagaggt tagcaaagca gttgaaactt gaaaaagagg agctagagcg
     1801 cttgaaagct gaagttaaca gtatggagca tgacctgatg cagaggcggc ttaggagagt
     1861 cagctgcacc actacaacgc ccacgcctga ggaaatgaca agattgagaa gcatgaacag
     1921 acaactccag ataaatgttg actgtacact gaaagaagtt gacctccttc aatctagagg
     1981 aaactttgat ccaaaagcca tgaataattt ttatgaccac atagaacctg gcccagttgt
     2041 accaccgaag ccatctaaaa aagactcatc agactcctgt gcaattgaga gaaaagcccg
     2101 aagaattagt gtgacttcca aagcaccggc agatatccat gaatcccagg ctgcagctac
     2161 agaagaacat ttaagtggct gcaggcagag tcctcggaca caaccccgag atgaggatta
     2221 tgaaggggct ccatggaatt gtgacagctg tacctttctc aaccaccctg cactgaatcg
     2281 ctgtgagcag tgtgagatgc cacggtacac ttgaattcac aagaatggac acaggttgac
     2341 agggaaactt tgagcactca ccgaaagaaa aggaaccttt gtgattgtgg tcatctgccc
     2401 agccgtgggg gaatggcgcc ctggccactg gctcaagaaa gggaaaatgg ggaggtcttt
     2461 cttttttcct ttcttaactc attacagagt gagaggtaga agggaatact tgaattcact
     2521 ccgcaagaat gtacacagaa atgttaaggg ctctcctgtg caatcccaat tgttacagtt
     2581 actgctgagt ggctcttcat ttctaaaggt gaactctgga tatggtagga catgttacag
     2641 tttatgcaga caaactgtga attccagagc agacttaact tggtcacagc tctttggaaa
     2701 ccaaggctcc ctgtgcctct tcctgctgct tcctgtgaag agatggacag gaaaaagcac
     2761 ccaggatatg ctttattttc ttttttgcaa aataatgacc ttatttgtaa ttgctgcttt
     2821 tttcaggggt aatttcaaac acattcatac gcaaacagga tactttaaaa tgtgatttgt
     2881 agtagtcagg aaataggcat atcatgccct ttgtgaggaa gtacaatcag aggtagtttt
     2941 atctcttttg cttgaacaat ggttcatcaa gctgcattga cactggtaac taaaacctac
     3001 ttatgccaca taaattattg tatattttct taggttattg attttgaaag ttaatgaagt
     3061 atggttttat aaaatgtcat tctcaaaatc catactttgc cagtagcaca ctgaatgtat
     3121 gccaaatgca agtccattcc aaaacacatt ggaaatccta agctcagttg tggttcttaa
     3181 gaaatgcttg ccgtatatcg gacccccact tctgttttgt aatgaataca tgatgtttac
     3241 agcacagaaa atactttgtg ccgtagtcct aatttagctg aaaaaaatca ttatgagcta
     3301 tttatttgca catgtgttaa ccagctaatg agagggaaag tgaagtcggc caatatcata
     3361 aagttgcatt aatgaaggag taagacaaga ctactcaaga aatatgattg ggctggggat
     3421 acagctcagt ggaagcacgg tagcctggca ttaacaaggt gctataggtt aaaaagaaaa
     3481 aaaaaactac tgtcaaaaga atgatgtatg cagagagttt gaattctttt ttagttgaat
     3541 agacagatca tactgatttc cagcaggtca gggaatacta aagcactact tatgaaacaa
     3601 tgcaggtgtt ggaatacact gaaaaagata ataaatcagg ccatttgctg ttatgtatca
     3661 tgagaaaatt aataatagta tatttaagta ggttctttgc cttaaatttt cttcttggct
     3721 cagaattgaa ttttggaatt tctccccatt ttggtgaaca tagacagcaa taaaattgcc
     3781 aggttttttc catcccgaag gatttcacct gagggcataa ccttaggaat actaggtctg
     3841 tccccaactc ctgtatacac agccacttgg tactgtcact gtattctcat ttagcagtaa
     3901 tttctgccag acctggaaaa acaagctgca ctcaatagca tattggaacc aaaggcatag
     3961 ctcattgtag ttttctatca gtcataatct tctacatcgc atatagcctt tatatgtgga
     4021 gaatgccccc aaatacatcc atttgtctca agaagagcat gattatgtaa ttatctccca
     4081 cacaactgtg gcaaaactgt gaaaataata atggtgggaa aagagataga tgcaaaccca
     4141 ttgatttgga aagggtgaaa ggcttgtaac atgggtttct tgtcaatccc cagaaccagt
     4201 ctagcagtcc tactgttctt taaggtgccc ttgcctttgt gtagtttttt tgtctccctt
     4261 agagatggac aactccactt gctgttacga aacaagttag gaggaacata tacactactt
     4321 gatatatcta gctaaaaggt gtacaaatgt tcatagtcag atgctgaaat acaaacatgg
     4381 cacttgtcag ttgaaaatga aaggagcatg tgtgaaaagt ctgatgcttt attaaaacca
     4441 tgtagttgtt attaaaacta ttgcatgaaa actcaccaag gtcaataagc tgttgacata
     4501 gagtagatgc atggtttcag gccttcagtg acacatctag tcaatcattg ctttcacctg
     4561 ccagaaaaaa atgaggcacc agttcactgt ttggtgttag gttcactgtt ggaagttagg
     4621 tatgagccat cagaaggact ttaagaaagt tttgtacatg ttaagtttta gttgttccca
     4681 tgttttaact gcccatataa gttgtattct gttcctagaa acgaacagaa caacttgaca
     4741 ctgacaaact tgatacattt gactgtatca catatagacc catatatata tagactgctc
     4801 cttagctatg accactttga ataggaattc attgaaccgt ccaggcggtt ttgtttcttt
     4861 tttccagaat gttctcctgg tcagattggc atcgataagc aggtggcata taatggtaga
     4921 tagactttgg tcagtactac tgtgaggtgt ccatgccctt tggatcactt agtgcactct
     4981 tgttctcgtg tgagaggctc actttcttaa actgctagtt tgatggacct ggtaacacag
     5041 acctgactct acattttaca tttcactctt tttgtaaact gggtttttag aaagcacgtt
     5101 agccattgtg ttaaaagaac attgtcccct taaattttgg aggttttcaa gtttaaagtg
     5161 gaaagaaagg agccacaaac ttctaaggac tgtaagatgt tttggattga ttccgatcta
     5221 gtttgggaaa aactagaggc aggggatatt aaagaaatac attgtacaaa tatgtagtta
     5281 tagtgcaggt taatgatggt ggaggaaagt gttgctaatt tgtttatttc ccaggaagaa
     5341 atgggacgtg tgatatgcag tttaactttt aaggagctgg tctcaatttt agtactttat
     5401 aattataaaa taaatcagtg tttccttaaa ttttgtcatt ggtttgtcac agttatctag
     5461 gggttcatat ccaactctct ggcaattcaa ttttatatag tctcttaaaa aagtaattgt
     5521 ttatgtattt ctgacagtat gaagagaaag aatatgaggc atagaactgt cttagaaata
     5581 tcggtgatat atcctggaat gtgaagaagt acctttaaga tgaaaaattg aattattttc
     5641 ctattgtacc attgtcagac gttgaatgaa tccatgttgc ggtgtgtgtc tgtatatttg
     5701 tagagaaagg gaaacgacga ttgaaatgtt actttctaac cttcggattg ggcactgcct
     5761 gtgctgcagc actactgaat ctttcttgaa agaatgaaca gtatttccct gttgtgaaag
     5821 ttaattctga tgatgtttca cattcaccag attttttttt ctgtattatt tgcgtcccca
     5881 aatatttagt acaagtagaa ttgtgcatgg cttgggcatt caaagataac cgaatgatga
     5941 gtcaatttta gtttctaaag ccatgaaaag ttgctttgag actgaacagt tctgagttat
     6001 ttataacaac acccattgtc catgtttctt ccctactgta aaagaattga tcagtttctt
     6061 cattaaagca gcaagaaatt aattaaatct tgtacatacc atgtctctta gatttctgtg
     6121 tatgttgtga aggacattat tttgagaaga aactgtacaa aggcatatta aaggctatgc
     6181 atgcaccgta cctccaagca gtacatattc agaaagtcaa agattcctgc aaaataaatt
     6241 aataaactaa aaccaagctc ta
//
