LOCUS       NM_001419513            1785 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus brachyury 2 (T2), transcript variant 1, mRNA.
ACCESSION   NM_001419513 XM_039090638
VERSION     NM_001419513.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1785)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Apr 6, 2023 this sequence version replaced XM_039090638.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.1082127.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760393,
                                           SAMEA5760433 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-204               JAXUCZ010000001.1  54932129-54932332   c
            205-305             JAXUCZ010000001.1  54930795-54930895   c
            306-414             JAXUCZ010000001.1  54920976-54921084   c
            415-483             JAXUCZ010000001.1  54901349-54901417   c
            484-622             JAXUCZ010000001.1  54900291-54900429   c
            623-711             JAXUCZ010000001.1  54897916-54898004   c
            712-828             JAXUCZ010000001.1  54892650-54892766   c
            829-912             JAXUCZ010000001.1  54877790-54877873   c
            913-1019            JAXUCZ010000001.1  54876510-54876616   c
            1020-1080           JAXUCZ010000001.1  54872644-54872704   c
            1081-1277           JAXUCZ010000001.1  54871693-54871889   c
            1278-1392           JAXUCZ010000001.1  54866820-54866934   c
            1393-1785           JAXUCZ010000001.1  54866023-54866415   c
FEATURES             Location/Qualifiers
     source          1..1785
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..1785
                     /gene="T2"
                     /note="brachyury 2"
                     /db_xref="GeneID:681288"
                     /db_xref="RGD:1597985"
     exon            1..204
                     /gene="T2"
                     /inference="alignment:Splign:2.1.0"
     exon            205..305
                     /gene="T2"
                     /inference="alignment:Splign:2.1.0"
     exon            306..414
                     /gene="T2"
                     /inference="alignment:Splign:2.1.0"
     CDS             307..1443
                     /gene="T2"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="brachyury 2 isoform 1"
                     /protein_id="NP_001406442.1"
                     /db_xref="GeneID:681288"
                     /db_xref="RGD:1597985"
                     /translation="MSQILRDHLITPKKQRARHTQVDDKEKAAQQILPEQPEAWPASP
                     PKASTRFPPRSDAYLIVGLQNELTRCGILKNMSDYEDFWKLVREEALGVETEEKLQKI
                     KLKLMNPRPWRSAASRRRDTRMLVTTHQDNGTQQGHPGRAQEAVEDGLEKERKNQGRH
                     QPGLDPLKHPRDTATLLDRLTEWRKRCQQWETAWRSYRGPEESKIMCKTKTDSQSETY
                     LSRLYQMYFTSLANMEFSRRLLERDGRFAEMDAQHRARSLLDYMVPRGHTQADVPPRE
                     PGEEDSPGPGQQPRAGPALRFLKCQSPGSPQRSPHLKTGRHQVTLCGMSKLSEHKRGK
                     LAPAGVTPDPRATAPLTLAHVIQTHPVVEAKTASRYWVNYVDDE"
     exon            415..483
                     /gene="T2"
                     /inference="alignment:Splign:2.1.0"
     exon            484..622
                     /gene="T2"
                     /inference="alignment:Splign:2.1.0"
     exon            623..711
                     /gene="T2"
                     /inference="alignment:Splign:2.1.0"
     exon            712..828
                     /gene="T2"
                     /inference="alignment:Splign:2.1.0"
     exon            829..912
                     /gene="T2"
                     /inference="alignment:Splign:2.1.0"
     exon            913..1019
                     /gene="T2"
                     /inference="alignment:Splign:2.1.0"
     exon            1020..1080
                     /gene="T2"
                     /inference="alignment:Splign:2.1.0"
     exon            1081..1277
                     /gene="T2"
                     /inference="alignment:Splign:2.1.0"
     exon            1278..1392
                     /gene="T2"
                     /inference="alignment:Splign:2.1.0"
     exon            1393..1785
                     /gene="T2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgtgagtctg actgtgggat ccacaaggtc ccagcctcgt tgggtgggca cagctgagat
       61 ccctggtgta gaagtgggtg agatatgagg aggagctgag gcacacacct gctctcaggg
      121 catctggaca ccaactgtgt gagtccagaa aggccctgtg gcctgaagaa tttctctagg
      181 gactggaggt ggcaggcctc ggaggtgtaa ctcctcagaa catgcccacg ggcctccaca
      241 cttaccacaa gggcttgact ctacctctcc tgagaagctg cttagcacaa agccctcacc
      301 aacaggatgt cccagatatt gagagaccat ttaataacgc caaagaaaca aagggcgcgc
      361 cacacccaag tagacgacaa agagaaggca gcacagcaga tcttgccgga acagcccgaa
      421 gcctggccag catccccgcc caaagcctca acccggttcc ctcccaggtc cgacgcctac
      481 ctgattgtag ggctgcaaaa cgagctgacc agatgcggaa tcttgaagaa catgagtgac
      541 tacgaggatt tctggaaact ggttcgggag gaagctcttg gagtagaaac tgaggaaaaa
      601 ctccagaaga taaaacttaa gttgatgaat cccaggccct ggcggtcagc tgcttccagg
      661 agaagggaca ccaggatgct ggtcaccact catcaggaca atgggacaca gcagggccat
      721 ccagggaggg cacaggaagc tgtggaggat ggactagaga aggagagaaa aaaccagggc
      781 cgccaccaac ctggcttgga tccactcaag cacccaaggg acacagcgac tcttctggat
      841 cggctcacgg aatggagaaa aagatgccaa cagtgggaaa ctgcctggag atcgtatcga
      901 ggacctgagg agagcaagat tatgtgtaag acgaagacgg attcccaaag cgagacatat
      961 cttagcaggt tgtatcagat gtatttcacc tcccttgcta acatggaatt ctcccgaaga
     1021 ctgctggaga gagatggtcg ctttgcagag atggatgctc agcacagagc tagaagcctg
     1081 cttgattaca tggttccaag gggccataca caggcagatg ttccaccaag agaaccaggg
     1141 gaggaggact ccccaggccc tggccagcag cctcgagcag gacctgccct ccgatttttg
     1201 aagtgccaga gcccaggaag tccacagaga agtcctcact tgaagacagg aagacaccaa
     1261 gtgaccctgt gtggcatgag caagctttcc gaacacaaga ggggcaagct tgctcctgcc
     1321 ggggtgaccc cagaccccag agctacagca cccctgaccc ttgcacacgt gatccagacc
     1381 catcccgtgg tggaggccaa gacagcaagt cggtactggg tgaactatgt ggatgatgaa
     1441 taagaatttt tttatagtca ttaggcaaaa tccaaacagg aaatgacagt tttctttttc
     1501 tttggttctg cattatgata agcagtgacg ttggtctctg gttaagaagc ttgtacctga
     1561 caggagatgc ctggcacttt gtcctttcat tgtaaaggtg gcaacggcac tgtcgtgcag
     1621 agcccgaacc gtgaactcag atgatgggga cggtcagaca gacagcacag tgggcaggag
     1681 caggaggctg agcagaatca aaaatgaggc ttcagcccat ggttattcat tctgactcgt
     1741 ggtccttctg cctgggtctt aaataaaaac gtgttttcta tttaa
//
