LOCUS       NM_001114599            3255 bp    mRNA    linear   ROD 16-JUN-2024
DEFINITION  Rattus norvegicus SUZ RNA binding domain containing 1 (Szrd1),
            transcript variant 1, mRNA.
ACCESSION   NM_001114599 XM_001072503 XM_575942
VERSION     NM_001114599.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3255)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Mar 19, 2013 this sequence version replaced NM_001114599.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.20934.1,
                                           SRR26360190.845910.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840124, SAMN12840127
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-68                JAXUCZ010000005.1  158726181-158726248 c
            69-118              JAXUCZ010000005.1  158708914-158708963 c
            119-373             JAXUCZ010000005.1  158707124-158707378 c
            374-3255            JAXUCZ010000005.1  158701753-158704634 c
FEATURES             Location/Qualifiers
     source          1..3255
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..3255
                     /gene="Szrd1"
                     /gene_synonym="C1orf144; RGD1560286"
                     /note="SUZ RNA binding domain containing 1"
                     /db_xref="GeneID:500575"
                     /db_xref="RGD:1560286"
     exon            1..68
                     /gene="Szrd1"
                     /gene_synonym="C1orf144; RGD1560286"
                     /inference="alignment:Splign:2.1.0"
     CDS             18..476
                     /gene="Szrd1"
                     /gene_synonym="C1orf144; RGD1560286"
                     /note="putative MAPK activating protein PM20,PM21; UPF0485
                     protein C1orf144 homolog; SUZ domain-containing protein 1"
                     /codon_start=1
                     /product="SUZ RNA-binding domain-containing"
                     /protein_id="NP_001108071.1"
                     /db_xref="GeneID:500575"
                     /db_xref="RGD:1560286"
                     /translation="MEDEEVAESWEEAADSGEIDRRLEKKLKITQKESRKSKSPPKVP
                     IVIQDDSLPTGPPPQIRILKRPTSNGVVSSPNSTSRPALPVKSLAQREAEYAEARRRI
                     LGSASPEEEQEKPILDRPTRISQPEDSRQPSNVIRQPLGPDGSQGFKQRR"
     exon            69..118
                     /gene="Szrd1"
                     /gene_synonym="C1orf144; RGD1560286"
                     /inference="alignment:Splign:2.1.0"
     exon            119..373
                     /gene="Szrd1"
                     /gene_synonym="C1orf144; RGD1560286"
                     /inference="alignment:Splign:2.1.0"
     exon            374..3255
                     /gene="Szrd1"
                     /gene_synonym="C1orf144; RGD1560286"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaaagcggc gagtaagatg gaagatgagg aggtcgctga gagctgggag gaggcggcag
       61 acagcgggga aatagacaga cggttggaaa aaaaactgaa gatcacacaa aaggagagca
      121 ggaaatccaa atctcctccc aaagtgccca ttgtgattca agacgatagc cttcccacgg
      181 ggccccctcc acagatccgc atcctcaaga ggcccaccag caacggtgtg gtcagcagcc
      241 ccaactccac cagcaggcca gcccttcctg tcaagtccct agcacagcgg gaggcagagt
      301 acgcagaggc tcggagacgg atcctaggca gtgccagccc tgaggaggag caggagaaac
      361 ccatcctcga caggccaacc aggatctccc aacccgaaga tagcaggcag cccagtaatg
      421 tgatcagaca gccgttgggt cctgacgggt cacaaggctt caaacagcgc agataaatgc
      481 aggccagaaa ggctgctgcc gccgccgccg ccaccaccac caccaccgcc tcctggattg
      541 tctgccatgg gtcgcactgc tgtggcagac gtctggactt gagcagaggg aataacctga
      601 cttacttgca ctgtgatccc ccttgctccg cccactgtga ccttgaaccc catgcactgt
      661 gacctctgcc tccccccctt cccactgtga ttggcatgtt gacaagggct gtcccaagtc
      721 aatagaaagg gaaagggtgg ggattagggg aggattaggg gaacctacca aggactcaga
      781 gtagagggtc agacagtgcc acttggccgc ttggggtaaa gccagtgcca gcaataacag
      841 tttatcatgc tcattaattt gggatttcaa aacacaaatg agaactcccc cacccacccc
      901 aagtgcatgt cgccatcact taaagtaagt tccattgaaa atatccttac tttttttttc
      961 ttcctatttt tgtttgttta atacaaatac ctgatttgca agaaaaagtg catggaaggg
     1021 gtttagcagt ttaatgaatt tttaattgag aaagggtagt ttagtagtca cttaaaagat
     1081 gtttctagga aatttgctag aaacattaac caataggatt ttgatgagct tagcttctgt
     1141 attcctactg ccacccagaa gagaggccgg gctcgggagc cccccataga tgagcatctg
     1201 tgcctaagtc atcttcctcc agctaagtcc cagctaagtc acatagagat agctcagaga
     1261 acctggggga ggggctgacc ccacgttagt attgtgagag atggggaaag tggtgagctt
     1321 ccccttccca cacccctcag ggtgggctgg ccccctacca gccaggtttg ctgcttctcg
     1381 aggagggcac agagtgactc tgggctcagc aaggcagtgg tgacacttgt ccagtgttgg
     1441 ctgtcagccc aagcccagga gagagtctgg ctccagaact ccaggcctct gcctggagag
     1501 ctcagaaggt agagaggcct gtcccttcca gcaagactgg atggaacgct taaggacctg
     1561 tggcgtgcca cgtctatgga cagtcccggc tcaggggcta tacaggagca tagcctgggt
     1621 gaaatgagtg gacgagagca gctggggaag catcggaaaa aactgcattg caaaggcaga
     1681 tggccaacag gttcctcaga cagtttcctc agagggctcg gctgcccttc ccttagcaga
     1741 gcaaggctga catgaaggcc atttgtgttc ccgagcctgg aggtttgctt tggctcttgg
     1801 tgggagaggc ttgagagggc ggctgtgtcc cgctaggtgc tctctggctt tgtagtctct
     1861 tccaatgcac ttcgccttat ccctcagcca gcctgacagc ctcccctctc ctgaccagca
     1921 ctcaggtttg ggagtgggtg gtgtggtgtg ggattagggc agccatagca gccaaggtgt
     1981 tgagttttgc aggatcatac tgcctttggt tcctctggcc tgtgccctgt agcaatggcc
     2041 cacatcacct tccccttggg aagagccctt ccccaacaca gccctagacc tgcctgaaac
     2101 caggggccat ctgtgagtga gctggaacag agcctcagca ggagggctgc tagctcagcg
     2161 tctagggccc gcccacaggg gctagtggtt ttggttgaag gacagactgt cctttctctg
     2221 gagaagggtg cagaaccctg cttgcctggt cccctctagt ggaagccaag ggcaggcagc
     2281 atctgcacat ggagagtgtg caagagtggc tctcccatcc cagtctggcc aaaggaggcc
     2341 ccgcccacag tgcccctgca cctcccaagc ccaccagcag tcatgcattt ggccttctag
     2401 atggagaggt ggccgggcaa gactaaagga aggaaggaaa gaaggaaaac agactggtgt
     2461 tgggggtggg gggcgcggga aacggtttgg attttgtgtg tgtgtttgtg gggtttattt
     2521 ttgtgtgtgt gtgttttcca ttttttgtag ttgtctataa ctccataagt gctttttttt
     2581 ttcttttttc ttttttctct ctttctgtct ttgagtaagt tgcaggcttt ggcttggaaa
     2641 tccccagggg gatgaagggc aggaccctga ggctgctgcc cctttgtctg ccttcgtggt
     2701 actgtccctt cccccagctc ttcctggacc ccatgagcca ggcctcagcc cttccagcta
     2761 accgcttccc atgagccact actctgatgt cagcctataa ccaaaggagc tgggggtccg
     2821 ggtctggtga ccagcccttc tcagtcccct caatcagggt gctccccacc tgcaggcagg
     2881 aggcaacacc ctatctgctg ccatcagccc cttccagagc ccacctgtcc cgcccagccc
     2941 tgtcctgccc tgccataccc tgctctgccc catctggggg tgctgtgctc agggatgggc
     3001 cggcagggct gatccagtct ccctggtaag cagagactca agaaaacctc tggggtcctg
     3061 cttctggtca tatgacccag ggggcgggcc cttgggcacc tgtacagaag ggactgggag
     3121 ggagggccgc accctgcagt cttgctctgc tggtgtagca ggcagctcct caccctaacc
     3181 cccaccgcgg gctcctgagt cggcagatta agcattttat aaattgtatt ttaaatacat
     3241 gttttaaact tgtca
//
