LOCUS       XM_039083958            2044 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus synoviolin 1 (Syvn1), transcript
            variant X2, mRNA.
ACCESSION   XM_039083958
VERSION     XM_039083958.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083958.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2044
                     /gene="Syvn1"
                     /gene_synonym="RGD1310488"
                     /note="synoviolin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 9 ESTs, 9 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 95 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:361712"
                     /db_xref="RGD:1310488"
     CDS             206..2044
                     /gene="Syvn1"
                     /gene_synonym="RGD1310488"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase synoviolin isoform
                     X1"
                     /protein_id="XP_038939886.1"
                     /db_xref="GeneID:361712"
                     /db_xref="RGD:1310488"
                     /translation="MFRTAVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMA
                     VLYIQAFVLVFLLGKVMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPR
                     FVALFTLLLFLKCFHWLAEDRVDFMERSPNISWLFHCRIVSLMFLLGILDFLFVSHAY
                     HSILTRGASVQLVFGFEYAILMTMVLTIFIKYVLHSVDLQSENPWDNKAVYMLYTELF
                     TGFIKVLLYMAFMTIMIKVHTFPLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLY
                     PDATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVL
                     RASLPAQSPPPPEPADQGAPPAPHPPPLLPQPPNFPQGLLPPFPPGMFPLWPPMGPFP
                     PVPPPPSSGEAAAPPSTSAATSRPSGAATTTAAGTSTSAPASGSVPGPEAGPAPGFPF
                     PPPWMGMPLPPPFAFPPMPVPPAGFAGLTPEELRALEGHERQHLEARLQSLRNIHTLL
                     DAAMLQINQYLTVLASLGPPRPATSVNPTEETASTVVSATPSTSVPSSEAPAPSLGAS
                     PPIPEAEKPPAPESVSTAEELPEDGEPDAAELRRRRLQKLESPVAH"
ORIGIN      
        1 ttgcggatgg ggttgggggg tcgacgtgta ggactttgcc ctcctgggtc actgagatca
       61 gcccgccccc ctgcgttccg ccgtcagttt tcggcctgtc agatggctgg agacctcagg
      121 cggcggcgcg gccaccgttc cagaggccag gccccgcctg cgaggttcgc aactcctagc
      181 gttcacaggt ctctgggcca gggcaatgtt ccgcaccgca gtgatgatgg cggccagcct
      241 ggcgctgacc ggggcagtgg tggctcatgc ctactacctc aaacaccagt tctaccccac
      301 tgtcgtgtat ttgaccaaat ccagccccag tatggcagtc ctgtacatcc aggcctttgt
      361 ccttgtcttc ctcttgggca aggtgatggg caaggtgttt tttgggcagc tgagggcagc
      421 agaaatggag cacctcttgg aacggtcctg gtatgctgtc actgagactt gcttggcctt
      481 caccgttttt cgggatgact tcagccctcg ctttgtggca ctctttacac tccttctctt
      541 cctcaaatgt ttccattggt tggctgaaga ccgtgtggac tttatggaac gcagccccaa
      601 catctcttgg cttttccact gccgcattgt ctctcttatg ttcctcctgg gcatcctgga
      661 cttcctcttt gtcagccacg cttatcacag catcctgacc cgaggggcgt ctgtgcagct
      721 ggtgtttggc tttgagtatg ccattctgat gaccatggtg ctcaccatct tcatcaagta
      781 tgtgctgcac tccgtggacc tccagagtga gaatccctgg gacaacaagg ccgtgtacat
      841 gctctacacg gagctgttta caggctttat caaggtcctg ctgtacatgg cctttatgac
      901 catcatgatc aaggtgcaca catttccgct ctttgccatt aggcccatgt acctggccat
      961 gaggcagttc aagaaagctg tgacagatgc catcatgtct cgcagagcca tccgcaacat
     1021 gaacacactg tacccggatg ccacccccga ggagctccag gcaatggata acgtctgtat
     1081 catctgcaga gaagaaatgg tgaccggtgc taagagattg ccttgcaacc acatctttca
     1141 tacgagctgc ctgcgctcct ggttccagag acaacagacc tgcccgacat gccgtatgga
     1201 tgttctgcgg gcatcattgc cagcccagtc accaccaccc cctgagcctg ctgaccaagg
     1261 agccccccct gcccctcatc ccccaccact gctgccacag ccccctaatt tcccccaggg
     1321 cctcctgcct ccttttcctc cgggcatgtt cccactgtgg ccaccaatgg gtccctttcc
     1381 acctgtccca cctcccccaa gctcaggaga ggctgcagct cctccgtcca ccagtgcagc
     1441 cacttctcga cccagtggag cagccaccac cacagctgct ggcacgagta cttctgcccc
     1501 agcatctggc tctgtacctg gcccagaggc tggtcctgcc cctggcttcc ctttccctcc
     1561 tccttggatg ggtatgcctc tgcctccacc ttttgccttc cccccgatgc ctgtgcctcc
     1621 tgcgggcttt gctggcctaa ccccagagga gctgcgggca ctggagggcc atgagcggca
     1681 gcacttggag gcccggctac agagtctgcg caacatacac acactactgg acgccgccat
     1741 gctgcaaatc aaccagtacc tcactgtcct ggcctccctg ggccccccca ggccagctac
     1801 ttcagtgaac cccactgaag agactgcctc tacagtggta tctgctaccc cttccaccag
     1861 cgtccccagc tctgaggctc ctgccccatc cctgggagcc tccccaccaa ttcctgaagc
     1921 tgaaaagcct cctgctcctg agtcagtgag cactgcagaa gagcttcctg aggatggaga
     1981 gcctgatgct gcagaactcc gccggcgtcg cctgcagaag ctcgagtctc ccgttgccca
     2041 ctga
//
