LOCUS       XM_039103022            4158 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus synaptotagmin 6 (Syt6), transcript
            variant X6, mRNA.
ACCESSION   XM_039103022
VERSION     XM_039103022.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103022.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4158
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4158
                     /gene="Syt6"
                     /note="synaptotagmin 6; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 12 ESTs, 14
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 14 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:60565"
                     /db_xref="RGD:62012"
     CDS             215..1549
                     /gene="Syt6"
                     /codon_start=1
                     /product="synaptotagmin-6 isoform X4"
                     /protein_id="XP_038958950.1"
                     /db_xref="GeneID:60565"
                     /db_xref="RGD:62012"
                     /translation="MPWRNKEASSPSSANPASEILQSPSSRGNMADKLKDPSALGFLE
                     AAVKISHTSPDIPAEVQMSVKEHIMRHTKLQRQTTEPASSTRHTSFKRHLPRQMHVSS
                     VDYGNELPPAAAEQPTSIGRIKPELYKQKSVDGDEAKSEAAKSCGKINFSLRYDYESE
                     TLIVRILKAFDLPAKDFCGSSDPYVKIYLLPDRKCKLQTRVHRKTLNPTFDENFHFPV
                     PYEELADRKLHLSVFDFDRFSRHDMIGEVILDNLFEASDLSRETSIWKDIQYATSESV
                     DLGEIMFSLCYLPTAGRLTLTVIKCRNLKAMDITGYSDPYVKVSLLCDGRRLKKKKTT
                     IKKNTLNPVYNEAIIFDIPPENMDQVSLLISVMDYDRVGHNEIIGVCRVGISAEGLGR
                     DHWNEMLAYPRKPIAHWHCLAEVKKSFKEWQGRAASFDSESSCPSPKPPPTP"
ORIGIN      
        1 tagagttcga gtcactgctc cgcagccctg aggatccggg gcatgagcgg agtttggggg
       61 gccggagggc ctcggtgcca ggcggcgctc gcggtcctgg cctctctgtg ccgggcccgg
      121 ccgccccctc tcgggctgga cgtggagact tgtcagagct tcgagctgca gcccccggag
      181 cagagtccaa gcgcggccga ctcagctgtg ctggatgccc tggaggaaca aggaggcctc
      241 cagcccttct tctgctaacc ctgcttcaga gatcctccaa agccccagct ccagaggcaa
      301 catggcggat aagctgaagg accccagtgc cctgggcttc ctggaggcag ctgtaaagat
      361 cagccatact tccccagata tcccagccga ggtgcagatg tcggtcaaag agcacattat
      421 gcgccacacc aagctgcagc gacagaccac agagccagcg tcgtctacca gacacacgtc
      481 cttcaagcgc cacctgccac ggcagatgca tgtctccagt gtggactacg gcaatgaact
      541 gccgccggcc gccgctgaac agcccaccag tattggccgt atcaagcctg agctctacaa
      601 gcagaagtca gtggatgggg atgaggccaa gtctgaggcc gccaagagct gtgggaagat
      661 caacttcagc ctccgctatg actatgagag tgagaccctg attgtacgaa tcctgaaggc
      721 ctttgacctc cctgccaagg acttttgtgg aagttctgac ccttacgtta aaatctacct
      781 cttgcctgac cgcaagtgca agctgcagac ccgggtgcac cgcaagacgc tgaaccccac
      841 ctttgatgag aacttccact tccccgtgcc ctatgaggag ctggctgacc gcaagctgca
      901 tctcagtgtc tttgactttg accgcttctc ccgccatgac atgattggcg aggtcatcct
      961 ggacaatctc ttcgaggcct ctgacctgtc ccgggagacc tccatctgga aggacatcca
     1021 gtacgctact agtgaaagtg tggacttggg agagatcatg ttctccctct gctacctgcc
     1081 cacagcaggc aggctcaccc tcacggtgat caagtgtcgc aatctcaaag caatggacat
     1141 cacgggctac tcagatccct acgtcaaagt gtccctacta tgtgatgggc ggagactgaa
     1201 aaagaagaaa acaaccataa aaaagaacac cctcaaccct gtctacaacg aggccatcat
     1261 ctttgatatc cccccagaaa acatggatca agtgagcctg ctcatctccg ttatggacta
     1321 tgacagagtt ggccacaacg agatcatagg agtgtgtaga gtggggatca gtgctgaagg
     1381 tcttggcagg gaccactgga atgagatgtt ggcataccca cgaaagccca tcgcacactg
     1441 gcactgcttg gcggaggtaa agaaatcctt caaagagtgg cagggccgag ctgccagttt
     1501 cgacagcgag agctcatgcc catctccgaa accacctccg acaccatgag ctgcacagcc
     1561 cagccaacgg gactcagcaa tgttatttcc gcacttgttc cagtatctaa acacagtgtt
     1621 tgtgcagtca cggcgatggc cgcagcagca gccactgcct gccagcccat ggtcttcact
     1681 gctctcgtgc agggcaaggc ccagacactt gtcctgtgtg atcagatctg tcctagtctt
     1741 ttctgtctcc caaggtgacg tttttgtggt tttttcactt tgtttggtct actgtcgagg
     1801 aagaaataaa aacataacga tttgagatac aaaacgaaga atggagagcc cggaaattgg
     1861 ttctgggaaa tacagtataa gatagcagtc ttgtagggga aaacagactg aatctctgaa
     1921 attttgtgcc tccatcaaac attgacccct ggagacgcac cagaaggatg gagctgtggc
     1981 tgtattttca gtgcccttca tgaatggaac ctatcaattt aggaaccttt ccaaggtgaa
     2041 ttattcttgg tggaagctct tcactgctgt gacacaagac aagatgtgat cctcttgtcc
     2101 cgtgttgaaa tcatgagacc tctgacatgt ttgtgactct gtaggggaat ccttattccc
     2161 ctttttgttg gctttcccaa actgggaaca ttttgattcc tcgtgggaac ttagtcactt
     2221 tccttaggaa cgatccactg aaagtagtca caccgtatgt tttctgacac tccacagtta
     2281 atgatcactg tgttgtttgg aaacaggatc ttagttctca aaaatagcct tcattgtaaa
     2341 gaaaggaggc acatatgttc cagaatgatt cctgtgttat acatagcttt ataattccac
     2401 aaagtatcaa gcagctgttt aaaatgccta aacagagcaa agaaaaatct agacaacacg
     2461 tttcttttct gaatggggca ttttgaaatc caaaccacac ttttgagtct gccatctatg
     2521 aagagtcttc tcttagttga aacccagtta gccagagact agttcagccc cacagactct
     2581 gggacaataa cttactttaa actttagttc tataaattaa taagtattct gtgttgtttg
     2641 tttcagtcat agtgaaaaga tctttgcttg tttgttttcc attagctctc taccttaggc
     2701 caaattcagt ctagaaaaca aaaatgaatg actgtattta taacagcaca tttctatgga
     2761 gtgaccagtg gccttcccac cacgccctgt aagcacatga acgtgagttt ccactccaac
     2821 ttgtggctac tgtaggactt gcatgaagca agtcagcttg gaaaatccat tctttcaaca
     2881 acagaaggac aaaaacacaa aagctatctg catacctcgt gtcttacact ttacataggc
     2941 cccatgctct aggagtagct acctaataaa gccaccacca ttttaagtca agccccaagt
     3001 ttctctgctg ccctaacttt atgtagtgtc tgttaaccag aggaatgacc ggattggaga
     3061 ttgagctaac aggctcttgt ggcaagaaaa gcggtccagc attctagtaa atgcagctga
     3121 atcttgactc cactagtatg agcctttggc tagggactgg tatgtaaaga tgatttttct
     3181 ctccaaatat tttacaattg gtaagtcttt ctagccaggc agtgccctgt ttggaagttc
     3241 actcaagagg gagaaaaatc acaaggtcat gacaagagtc tcagcaagcc agtaacttca
     3301 ttgtgtttct tgactctgga tggaccccac taaggtgact gtctcagcca cacagcagtg
     3361 taaactagga aggggcagat taagtttgct gggtcataag gaacccagaa gctagtgagt
     3421 gcgtctttcc agaagtggac ttgaaacaca tgcccagctg ccaccccgaa acccttaggc
     3481 aggtgggatg ttcccgtcta aggttttaga gagaagggtg tgagctgtct gagacagctt
     3541 ccatgcctct tttctgtaag taaacatccc aaaggtttct ggaaacagca cctggttatg
     3601 gcctcgcccc tctcatcacc tgagtcaacc gctttagctc caccagcttc ggtaggcatt
     3661 aggcttggaa gctcactcca gagaggcttc tagctcctgg gctccctccc ccaagtcccc
     3721 atcaaaggtg gccagagcag tccaacctca ttctgacgca tgaatgacat gaacaagctt
     3781 ctccatttat cagccaggat tcttccctca cagacgagaa ctaatgacaa caaatgcaga
     3841 ataaactgag attcaaaact ggctcttttg ttggcttccc ctggtacaag aaaccccttg
     3901 tgggtggcaa gctctgctgg ttatgataac cagagccatt tgcacacaga ggtttgctaa
     3961 agacaccaag ttctcctctc ctttatttag aagtctttct tggctgagag atgctccccc
     4021 tccccctttg cacttaccca ggatgttaat taattgtatc atcatttaaa aaattatgtt
     4081 gttaattact gctttgtgtc ttcccacccc tgtcacagcc tggagttttt attcaattaa
     4141 atctctgtct cttgccca
//
