LOCUS       XM_234300               2928 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus synaptotagmin 16 (Syt16), transcript
            variant X1, mRNA.
ACCESSION   XM_234300
VERSION     XM_234300.8
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_234300.9.
            
            On Jan 21, 2021 this sequence version replaced XM_234300.7.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2928
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2928
                     /gene="Syt16"
                     /note="synaptotagmin 16; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 9 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 35 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:299142"
                     /db_xref="RGD:1564654"
     CDS             37..1971
                     /gene="Syt16"
                     /codon_start=1
                     /product="synaptotagmin-16 isoform X1"
                     /protein_id="XP_234300.4"
                     /db_xref="GeneID:299142"
                     /db_xref="RGD:1564654"
                     /translation="MVLVMASQDVQNFFQPLSSWLSRVYEALQQAGDALSASLVLLSK
                     HDSALSDKPEQDLDAIQIQETCLEDGEQDNDGGPEETGSLFLEEDHFSSSNSDLRDSV
                     QTASLRLGQQAKDSSTVISQWPNKIPGGPKPPHVLSSIAEEEHHSEGQRCDLQHGSDT
                     QLPGSLEKVNGRKQANSFGDDEEPSTSSESDEDVTKQFEISVSRSQSFRTGVPEKGKT
                     TELEQKTKCKHFLCTHQEDSAEGSACEDLDGPSQLSYSEIRSYEDRPISILSQSPCES
                     RDTRHHGPCHLGAGVVRNLSRPCADGILETETAFISRGFEDPYATHNSSMWSPEEQDG
                     TSLQVPPRLPEPISKCGDLDVIFEYRAVTQKLTVTIVRAQGLPDKDRSGVNSWQVHIV
                     LLPSKKQRGKTNIQRGPNPVFKEKVTFTKLEPRDVAACAVRFRLYAARKMTRERMMGE
                     KLFCLSHLHPEGEMKVTLVLEPRSNLSSGESPLSPSVVSHSDSASSTQSLSHGGVPEL
                     LVGLSYNATTGRLSVEMIKGSHFRNLAANRAPDTYGKLFLLNCVGQEMSRCKTSIRRG
                     QPNPVYKETFVFQVALFQLSDVTLMISIYSRRTMKRKEMIGWIALGQNSSGEEEQEHW
                     DEMKDSKSQQICRWHTLLES"
ORIGIN      
        1 aaacaagcag actctggaga cacgaggtag ttggtcatgg tgttggtcat ggcatctcaa
       61 gatgtccaga acttcttcca acctttgtcc tcctggctct cccgagttta tgaagctctc
      121 cagcaagccg gggatgcctt atctgcttca ctggttcttc ttagcaaaca cgattcggca
      181 ctgagtgata agccagagca ggacttagat gctattcaga ttcaggaaac ctgcttggaa
      241 gatggagaac aggacaacga tgggggtcca gaggagacag gctccctgtt tcttgaagag
      301 gaccatttct caagctctaa tagtgatttg cgggactctg tccagacggc aagcctcaga
      361 cttggtcagc aagccaaaga ctcaagcact gtaatttccc agtggcccaa taagatccca
      421 ggtggcccaa agcccccaca tgtgctttct tctatcgctg aggaggaaca tcactctgag
      481 gggcagagat gtgaccttca gcatggctct gacacccagc ttcccggctc tttagaaaaa
      541 gttaacggaa gaaagcaagc taacagcttt ggggatgatg aagagccatc cacatcttct
      601 gagagcgatg aagatgtgac taagcagttc gagatctcgg tgtcccgatc ccagagtttt
      661 cgtacaggag tacctgagaa gggaaagaca acagagttgg agcagaaaac aaaatgcaaa
      721 catttcctgt gtacccacca agaagacagc gctgaagggt ctgcatgtga agatttggat
      781 ggacccagcc aactcagtta ttctgagatt cggtcttacg aagaccgccc catttccatt
      841 ctctcacaat ctccctgtga gagcagggac accaggcacc atggcccttg tcatctgggc
      901 gctggcgtgg tccgaaacct cagtcgtcct tgtgcagatg gcatcctgga gacagagaca
      961 gcgtttatca gtcggggctt tgaagatccc tatgccaccc acaactcctc tatgtggagt
     1021 ccagaggagc aggatgggac cagtctgcag gtaccaccaa ggcttccgga gcctatctca
     1081 aaatgtgggg acctcgatgt catctttgaa tatagagctg taacccagaa gcttaccgtg
     1141 accattgtga gagcacaggg tctcccagat aaggaccgaa gtggtgtcaa ctcctggcaa
     1201 gttcacatag tgctactgcc cagtaagaaa cagaggggta agacgaatat acagagaggg
     1261 cccaaccctg tcttcaagga aaaggtcacc ttcaccaagc tggagcccag agatgtggct
     1321 gcctgtgctg tccgcttccg cctgtatgct gcccggaaga tgacccgaga gagaatgatg
     1381 ggagagaagc tgttctgtct tagccacttg cacccagaag gggaaatgaa agtgactcta
     1441 gttctggagc ccagaagtaa tctgagcagt ggagagtctc ccctcagccc atctgtggtg
     1501 tctcacagtg acagtgcttc atccacacag tcactgtctc atggaggagt gccagagcta
     1561 ctggtgggac tgtcctacaa tgccacaaca gggcgattat ctgtggaaat gatcaaaggc
     1621 agccatttcc gcaacctcgc tgctaaccga gctcccgata catatggaaa actcttcctc
     1681 ctcaactgtg tgggtcaaga gatgtcccgc tgcaagacgt ccattcggcg tggccagccc
     1741 aaccccgtct ataaagagac cttcgtcttc caggtggccc tcttccagct ctcggatgtt
     1801 accttgatga tttccattta tagcagacgc acaatgaagc gtaaagagat gattggctgg
     1861 attgctctgg gccagaacag cagtggggag gaggagcagg agcactggga cgaaatgaag
     1921 gacagcaaaa gccagcagat ctgcaggtgg catacgctgt tggaatccta ggtttatcaa
     1981 cagcgttccc gtgctacgtc agccttgctt acctaacacc aagtcagatc atggcaggtg
     2041 gaggagcttt caaatggaga attttactaa tcttgggtca ttccgtggtg tggaaccatc
     2101 tcaaaggttc gatctgagtt taaatgttgt cgtgaaagga aacctacata cacagtatgg
     2161 gcaatggtat ctagttgaga ccactggcta tatcacaact tgtgctaatg gatgattgtg
     2221 ttttggttcg tactatgtgg ttcagcttcc tcctgctgtc tctttttgct gggagaatag
     2281 cctgagattt caaaggagct gtaaacatta ctgttttcca tcactgaggt gtatgaatca
     2341 gactcttctc agtgttcaaa attccaaaac agaaatgaat cagatgctga gcgttacgga
     2401 aggacgtaac ccaccacagt cctctgccac ccctattctc tttatggaaa aaaaaagccc
     2461 tgtttattta aaaggtaatt gctataaatt tgtggtgtaa aataaatttg tattcatgaa
     2521 atgtctcttt ttatctcaat tagatatcac gatttctaaa agaattgggg tagacaaatc
     2581 atcttaaagc tctaaagcag ttaaaaaaaa tgactgttat ctgacctgtc tctttttgaa
     2641 tatttaagat ttccaaagtc aaggattttt gtgctttctt atcaaattgg tacccagaga
     2701 agaagaggaa aacctaggag ataatttaag ccttggcttt cttgatgttt cagaacctgt
     2761 cattcatttg gattagacct tttctataga taattgtact aactctcaca tgtatttttt
     2821 taatgtactt ctgcatgcca accacatttg tctttatgct atgtacctta ctaatagaac
     2881 atagaaagat gcatacagtg gatctcaata aatactaatt tgattgac
//
