LOCUS       NM_030839               3519 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus synaptotagmin 13 (Syt13), mRNA.
ACCESSION   NM_030839
VERSION     NM_030839.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3519)
  AUTHORS   Fukuda,M. and Mikoshiba,K.
  TITLE     Characterization of KIAA1427 protein as an atypical synaptotagmin
            (Syt XIII)
  JOURNAL   Biochem J 354 (Pt 2), 249-257 (2001)
   PUBMED   11171101
REFERENCE   2  (bases 1 to 3519)
  AUTHORS   von Poser,C. and Sudhof,T.C.
  TITLE     Synaptotagmin 13: structure and expression of a novel synaptotagmin
  JOURNAL   Eur J Cell Biol 80 (1), 41-47 (2001)
   PUBMED   11211934
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Oct 27, 2022 this sequence version replaced NM_030839.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.1886471.1,
                                           SRR26643299.14818.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-269               JAXUCZ010000003.1  99332554-99332822
            270-495             JAXUCZ010000003.1  99358021-99358246
            496-630             JAXUCZ010000003.1  99360455-99360589
            631-932             JAXUCZ010000003.1  99363242-99363543
            933-1062            JAXUCZ010000003.1  99368488-99368617
            1063-3519           JAXUCZ010000003.1  99370504-99372960
FEATURES             Location/Qualifiers
     source          1..3519
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q31"
     gene            1..3519
                     /gene="Syt13"
                     /gene_synonym="sytXIII"
                     /note="synaptotagmin 13"
                     /db_xref="GeneID:80977"
                     /db_xref="RGD:621877"
     exon            1..269
                     /gene="Syt13"
                     /gene_synonym="sytXIII"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..1367
                     /gene="Syt13"
                     /gene_synonym="sytXIII"
                     /note="synaptotagmin XIII"
                     /codon_start=1
                     /product="synaptotagmin-13"
                     /protein_id="NP_110466.3"
                     /db_xref="GeneID:80977"
                     /db_xref="RGD:621877"
                     /translation="MVLSVPVIALGATLGTATSILALCGVTCLCRHMHPKKGLLPRDR
                     EPDPEKARPGVLQAAQQFNVKKSTEPVQPRPLLKFPDIYGPRPAVTAPEVINYADYTL
                     GTTEESAAPASPQAQSDSRLKRQVTEELFILPQNGVVEDVCVMETWNPEKAASWNQAP
                     KLHFRLDYDQKKAELFVTSLEAVTSDHEGGCDCYIQGSVAVKTGSVEAQTALKKRQLH
                     TTWEEGLALPLGEEELPTATLTLTLRTCDRFSRHSVIGELRLGLNGASVPLGTAQWGE
                     LKTTAKEPSAGTGEVLLSISYLPAANRLLVVLIKAKNLHSNQSKELLGKDVSVKVTLK
                     HQAQKLKKKQTKRAKHKINPVWNEMIMFELPDDLLQASSVELEVLGQGEEGPSCELGR
                     CSLGLHASGSERSHWEEMLKNPRRQIAMWHQLHL"
     exon            270..495
                     /gene="Syt13"
                     /gene_synonym="sytXIII"
                     /inference="alignment:Splign:2.1.0"
     exon            496..630
                     /gene="Syt13"
                     /gene_synonym="sytXIII"
                     /inference="alignment:Splign:2.1.0"
     exon            631..932
                     /gene="Syt13"
                     /gene_synonym="sytXIII"
                     /inference="alignment:Splign:2.1.0"
     exon            933..1062
                     /gene="Syt13"
                     /gene_synonym="sytXIII"
                     /inference="alignment:Splign:2.1.0"
     exon            1063..3519
                     /gene="Syt13"
                     /gene_synonym="sytXIII"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagtctaga gagcggctgg agccaggcgg gagcgcgagg tgcaggaggc cggcgggagg
       61 cgggcgagcc gcgggaagca ggcaccatgg ttctttcggt gcctgtgatc gcgctgggcg
      121 ccacgctggg cactgccacc agcatccttg cactgtgtgg ggtcacttgc ctgtgccgac
      181 acatgcaccc caagaagggg ttgctgccgc gggaccgtga gcccgacccg gagaaagcga
      241 ggcccggtgt gctccaggca gcccaacagt tcaacgttaa aaagtccaca gagcctgtcc
      301 agccccgacc tctccttaag ttcccggaca tctacggtcc ccggccagct gtgacggccc
      361 cagaagtcat caactacgca gactacaccc tggggaccac agaggagtct gctgcacctg
      421 ccagccccca ggcccagagt gacagtcgcc tcaagaggca ggtcacagag gagctgttca
      481 tcctccctca gaacggtgta gtagaggatg tctgtgtcat ggagacctgg aacccagaga
      541 aggctgccag ctggaaccag gccccaaaac tccactttcg cctggactat gaccagaaga
      601 aggccgagtt atttgtgact agcctggaag ctgtcaccag tgaccacgaa ggaggctgtg
      661 actgttacat ccagggcagc gtggctgtca agacaggctc tgtggaggca cagacggctc
      721 tgaagaaacg gcagctgcac acaacctggg aggagggcct ggccctgccc ctgggtgagg
      781 aagagctccc cacagctacc ctgacactca ccctgaggac ctgtgaccgc ttctccagac
      841 atagtgtgat tggggaactc cgcctgggcc tgaatggagc atctgtaccc ctggggacag
      901 cacagtgggg tgaactgaag accacagcaa aggagccatc tgcaggaact ggggaggtcc
      961 ttctgtcaat cagctacctt ccagctgcca atcgcctcct ggtggtgctg attaaagcta
     1021 agaacctcca ctccaaccaa tccaaggagc ttctaggcaa agatgtctct gtcaaggtga
     1081 ccttgaaaca ccaggctcag aagctgaaga agaaacagac aaaacgggcc aagcacaaga
     1141 tcaaccccgt gtggaatgag atgatcatgt ttgagctacc agatgacctg ctgcaggcat
     1201 ccagtgtgga gctggaggtg ctgggccagg gtgaggaggg gccgagctgc gagcttgggc
     1261 gctgcagcct gggcctgcac gcctctggct ctgagcgaag ccactgggag gagatgctaa
     1321 aaaacccacg ccggcagatc gccatgtggc accaattgca cctgtagttg gccaccggcc
     1381 actgaccgtc tttcttggac acagtcatct tccaggctca gctgtcagtc atcccctcgt
     1441 gccctgtcca catgcctaca cccaaagaca gatgcagaca tgttggctga ggccaggaac
     1501 tcattcctct cttactgtat tcccaatact aaagagtgag cagcattggc aggacagtga
     1561 gcaggactgg catgtcaggg tcactcagaa gactgtgtgt cttgctcatc tgtgttttgg
     1621 aaaaagatgt gcgtcaggta tactcagtag acagtccctg ctcacattgg tctaaagcag
     1681 cagttctcaa cctgtgtgtc atggcccctt tggccaccct ctatctccaa aatatttaca
     1741 ttgtgattca taacagtagc aaaattacag atatgaagta gcaatgaaaa tagttctgtg
     1801 gttggagatt gccaaaacac aagaaacttt attatagggt cacagcattt ggaaggttga
     1861 gaactactgg ctggcagcag gtccctgggc cacgggggct catgccacac tgatgctcta
     1921 ggtggaatac accaggctcc tgtccttaac tagcacaggg gttctggagc aggaggggct
     1981 gcgcttgatg aggtcccttc gacactaccc aggcaacctt tccacccttg acctccagaa
     2041 tctcaacact gggcagtatg aagacaagag ctctccgctt acttctcctt ttttacattt
     2101 ctgctgttca tatcccactc ttgaactgta ctgtgtgttt tgactgtttt atttaaggaa
     2161 ttgatgtggg ttttgtttgt ctttgatcac acgtagagtg ccctttccct ggcagaccta
     2221 ggttgccgtt cctctggagt gtctgtggca ttctgaggac aactgtcatg tctaccagcg
     2281 tcacccaccc agttgactcc gtgtgacagg cctgtcctgc tcggtgtgcc tgcacttcag
     2341 gaagaagcag ctctgagctt gccttgttcc ttcaggctat gtgaatgagg aggtgggaga
     2401 actttaaact tggaattatg cctccctcca acttggggtc tatgcccctt taactcaaat
     2461 aacaaaaggc taggtttatg ccccgttgat atttccagta gatgtcccac taggaaaaag
     2521 tataagtagc tagctgcagg ggtagatact tgtgaggcag aattcgggtt gtcagttact
     2581 tccttgctcc acagcgcctc agtgtggcta accatagcac agcaccaatg tcatgggtgc
     2641 ctgccagtcc gacttcagaa ggtagcaggc atcagttgtc actgtccact tgatgggact
     2701 tcctggctcc tccattggct gtgcttcctc ttcaaaacct cctctgtaaa ttgctcagag
     2761 atgttagact ggtgaaccaa aaaatttcag tcacctttta catcagttta gcctgtttcc
     2821 agccatgctt ataagtcaca tcccaattag cttaggaagg gtctatatct ttgtcaggga
     2881 gtgttttcca gcaagaggtg gaaataaagt gagaggccat tacaggctgg gctatgatgg
     2941 gcagtgagga gttcacccca gttctctgtg aatcccctcc cagtgtcaac taggtatcta
     3001 tttgttgagt gtccaccaag accttgcatg tgtctgtcca ttctgattac agaagactct
     3061 ggggggcggt gagtgggcag cgtatcaccc taacggaaac aacagataag agaatcctgg
     3121 gaatgctgtt caggtcagca gctctcagat agaaatgggt cccggggtaa gggggcagta
     3181 tctgaactga actgaggtgg gaatttttgg aggagaaagt tagtcctgtg gagtgtttct
     3241 gccttcgtcg tttcctgttg ttagatgctg cgtgttcatt atgccatccc gaatcaaagc
     3301 acaaaaatgt cgcatgagac attgtggtca catgtctggt tacactttgg agcacaaatc
     3361 ttagagtggt aaataaatca tttccaatgg ggttggcagc ccagtgtttc tctttgttcc
     3421 tttttgttaa tattttagat gtataaaatt taggaaaaaa atcttgtgta tcaagcaccc
     3481 acgaacctct gccaacttca ataaaccttg acaactaca
//
