LOCUS       NM_001399565            1654 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus Sys1 golgi trafficking protein (Sys1), mRNA.
ACCESSION   NM_001399565 XM_001062200
VERSION     NM_001399565.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1654)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 12, 2022 this sequence version replaced XM_001062200.7.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22399492.1040731.1,
                                           SRR22399489.2451251.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-138               JAXUCZ010000003.1  173610408-173610545
            139-375             JAXUCZ010000003.1  173610710-173610946
            376-443             JAXUCZ010000003.1  173612558-173612625
            444-1654            JAXUCZ010000003.1  173613600-173614810
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..1654
                     /gene="Sys1"
                     /note="Sys1 golgi trafficking protein"
                     /db_xref="GeneID:685079"
                     /db_xref="RGD:1583224"
     exon            1..138
                     /gene="Sys1"
                     /inference="alignment:Splign:2.1.0"
     exon            139..375
                     /gene="Sys1"
                     /inference="alignment:Splign:2.1.0"
     CDS             214..684
                     /gene="Sys1"
                     /note="SYS1 Golgi-localized integral membrane protein
                     homolog"
                     /codon_start=1
                     /product="protein SYS1 homolog"
                     /protein_id="NP_001386494.1"
                     /db_xref="GeneID:685079"
                     /db_xref="RGD:1583224"
                     /translation="MAGQFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDALVRSS
                     PSLDQMFDAEILGFSTPPGRLSMMSFVLNALTCALGLLYFIRRGKQCLDFTVTVHFFH
                     LLGCWLYSSRFPSALTWWLVQAVCIALMAVIGEYLCMRTELKEIPLSSAPKSNV"
     exon            376..443
                     /gene="Sys1"
                     /inference="alignment:Splign:2.1.0"
     exon            444..1654
                     /gene="Sys1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agccgtgtgc cgcagctatt cagcctctct aggccggtgg gtcttccgct ccatggtcct
       61 gtctgtcagc gcagtttcag aagtccaccg cctaggcccg gccgcgctcg gacgcttcga
      121 tccccgagcg ggtcgcgggt agtccagcgg ccgcggaacg atggcgtggc ggcactgaca
      181 ggcgcgggcg gctgccgagc cccgcgggcc ggcatggcgg gccagttccg cagctacgtg
      241 tgggaccctt tgctgattct gtcgcagatc gtgctcatgc agacagtcta ctatggctct
      301 ctgggcctgt ggctggcgct agtggacgcg ctggtgcgca gcagcccgtc cctggaccag
      361 atgttcgacg ccgagatcct gggcttctcc acccctccag gccggctctc aatgatgtcc
      421 ttcgtcctca acgccctcac ctgtgccctg ggcttgctgt acttcatccg gcgcgggaag
      481 cagtgcctgg atttcactgt cactgtgcat ttctttcacc tcctgggctg ctggctctac
      541 agctcccgtt tcccctcggc gctgacctgg tggctggtcc aagctgtgtg cattgcactc
      601 atggccgtca tcggggagta cctgtgcatg cggacggagc tcaaggagat ccccctcagc
      661 tcagccccta agtccaatgt ctagacttgg gcccatcgga cactctgctg gcacttgtgc
      721 cccatcacct cgggctgctc agacctccag atggggtccg gcccaagtct gagaggaacc
      781 ctggaaatgt gaagcctgtt ggtggagaga tagtgaggtc ctgccatgaa ggcaggtagc
      841 agccatggtc acagatgcaa gaacggcctc tgcctgctgg agccttggta tttggaggcc
      901 ggtgaggggc ctcacggagg gtagtgacag atttggaacc atgtcgtgtg agccaccata
      961 ctgtcaccag cctgttattt taaaaagaaa aaaaaaaatc aaggatatct gattggaaca
     1021 aaccactctt ctcgttgtct gtcctatgcc ttgtgacagc tggtaccttt gccatgttgc
     1081 caaaccagtg attctgtgtg gggaaacatt tgatttctgg gtccatagcc acagaaggaa
     1141 tcgtaggtac aaagtactag gctgctgaca gagaggacgg cgggtagagg aggtaccaag
     1201 cacaagaaaa atgcacaact gtgccctgtg atacatgcac acgcacgtac ctgtgttgtg
     1261 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtccccaag aacccattac tgacttcctc
     1321 caatttcctg tatgaactct cccttgctgc tggctctcaa catagcgagt caaagacaca
     1381 gggcccagag aagatctcag catcccccaa acccccgcct tagctttata ataaaagcca
     1441 ctgtctgcgc tctagaaatg accaggcacc cagcttccac tggatctcag ttgtggcaag
     1501 agcttctgtt tgtggtcttg tttgtgttct gtatggagag gggatcctaa cggtgctaga
     1561 ggctctgctg aggctagagc ttgcttttga gtggtctcct ctgtgagggc tggcagctgt
     1621 ccttcctggg tgcataaata cactattttc caca
//
