LOCUS       NM_001014263             965 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus synaptophysin-like 1 (Sypl1), mRNA.
ACCESSION   NM_001014263 XM_345656
VERSION     NM_001014263.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta
            R, Wang NS and Knepper MA.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   2  (bases 1 to 965)
  AUTHORS   Takamori S, Holt M, Stenius K, Lemke EA, Gronborg M, Riedel D,
            Urlaub H, Schenck S, Brugger B, Ringler P, Muller SA, Rammner B,
            Grater F, Hub JS, De Groot BL, Mieskes G, Moriyama Y, Klingauf J,
            Grubmuller H, Heuser J, Wieland F and Jahn R.
  TITLE     Molecular anatomy of a trafficking organelle
  JOURNAL   Cell 127 (4), 831-846 (2006)
   PUBMED   17110340
REFERENCE   3  (bases 1 to 965)
  AUTHORS   Haass NK, Kartenbeck MA and Leube RE.
  TITLE     Pantophysin is a ubiquitously expressed synaptophysin homologue and
            defines constitutive transport vesicles
  JOURNAL   J Cell Biol 134 (3), 731-746 (1996)
   PUBMED   8707851
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC082078.1.
            
            On Apr 20, 2005 this sequence version replaced XM_345656.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC082078.1, EV767938.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132265, SAMD00132273
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q16"
     gene            1..965
                     /gene="Sypl1"
                     /gene_synonym="Sypl"
                     /note="synaptophysin-like 1"
                     /db_xref="GeneID:366595"
                     /db_xref="RGD:1359569"
     exon            1..113
                     /gene="Sypl1"
                     /gene_synonym="Sypl"
                     /inference="alignment:Splign:2.1.0"
     CDS             63..839
                     /gene="Sypl1"
                     /gene_synonym="Sypl"
                     /note="Pan I; pantophysin"
                     /codon_start=1
                     /product="synaptophysin-like protein 1"
                     /protein_id="NP_001014285.1"
                     /db_xref="GeneID:366595"
                     /db_xref="RGD:1359569"
                     /translation="MASKAYLIRQRFSRLSQRMSTFQINLNPLKEPLGFIKILEWFAS
                     IFAFATCGGFKGKTEIQVNCLSAPGENKTITATFGYPFRLNQASFHSAPNVNVCKVNW
                     EKHVLIGDYSSSAQFYVTFAVLVFLYCIAALLLYVGYTNLYRDSRKLPMIDFIVTLVA
                     TFLWLVSSSAWAKALTDIKVATGHRIVEELDPCKSEVSCYFVSVTSMGSLNVSVIFGF
                     LNMILWGGNAWFVYKETSLHSPSNTSASHGQGGVPPTSGM"
     exon            114..185
                     /gene="Sypl1"
                     /gene_synonym="Sypl"
                     /inference="alignment:Splign:2.1.0"
     exon            186..310
                     /gene="Sypl1"
                     /gene_synonym="Sypl"
                     /inference="alignment:Splign:2.1.0"
     exon            311..518
                     /gene="Sypl1"
                     /gene_synonym="Sypl"
                     /inference="alignment:Splign:2.1.0"
     exon            519..704
                     /gene="Sypl1"
                     /gene_synonym="Sypl"
                     /inference="alignment:Splign:2.1.0"
     exon            705..942
                     /gene="Sypl1"
                     /gene_synonym="Sypl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctagggagcg cgcgtgcgct gtagagaaag agataggctt tggggaaagg ggcgccacac
       61 gcatggcttc caaagcctac ttgattcgcc agcggttcag ccggctgagt cagaggatgt
      121 ccaccttcca gatcaacctc aacccgctca aggagccgct cggcttcatc aagatcctcg
      181 agtggtttgc ttctatcttt gcttttgcca cctgtggtgg gtttaagggc aaaacagaaa
      241 ttcaagtgaa ttgtctttct gcacctggtg aaaataagac gattacagct acttttggtt
      301 atccattcag gttgaatcag gcatcatttc attcagctcc aaatgtcaat gtgtgtaagg
      361 tgaattggga aaagcatgtc ctcataggtg attactcctc ttccgcacag ttctatgtca
      421 cctttgcagt cttggtgttc ctgtactgca ttgctgccct tctcctctat gttggttaca
      481 ccaacctcta ccgggatagt cgcaaactgc ccatgatcga ctttattgtt actcttgttg
      541 ctactttttt gtggttggtg agttcctcgg cctgggctaa agctcttaca gatattaagg
      601 tagctactgg acacagaatt gttgaagaac ttgatccttg taagtcagaa gtgtcatgtt
      661 actttgtctc tgtgactagt atggggtccc tgaatgtatc cgtgatcttt ggctttctga
      721 atatgatact ttggggagga aatgcttggt ttgtgtacaa ggagaccagc ttacatagtc
      781 catcaaatac gtcagcttct catggccaag gaggtgtccc acccacttct ggaatgtaat
      841 taaagggaga aatacactgt atgaaatgtg tgctatacta tgccttgttg ccaacatctt
      901 gagaagcatt attgtttcta ataaaaagta atggcttttt caaaaaaaaa aaaaaaaaaa
      961 aaaaa
//
