LOCUS       XM_039097053            5537 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus synaptopodin (Synpo), transcript
            variant X4, mRNA.
ACCESSION   XM_039097053
VERSION     XM_039097053.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5537
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5537
                     /gene="Synpo"
                     /note="synaptopodin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 39 ESTs, 7 long
                     SRA reads, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:60324"
                     /db_xref="RGD:620668"
     CDS             261..3695
                     /gene="Synpo"
                     /codon_start=1
                     /product="synaptopodin isoform X1"
                     /protein_id="XP_038952981.1"
                     /db_xref="GeneID:60324"
                     /db_xref="RGD:620668"
                     /translation="MLGTHFPPPPLGPSEGRAAPCTFQIPDGSYRCLALEAEESSSED
                     GLQGEVRLVDLEEEGTSKSRVNHGTPPLSRAPAIIQPSSCCREARGGFQHSDKPSREW
                     DVVQARKVMTASVSSSPVPRVAQKPALGRSTSFTEKDLKEAKERSQRIAAQLTTPPSS
                     NSRGVQLFNRRRQRVNEFTLESRGQRSPKLSQEALQTGHPSSPIGHAPGLSVNPTSPS
                     KPGSPKHSSSQSPSRGVPGHIMEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAALL
                     TANGLHLSQNRETQQSSPNPPETEEVPSPAADINQNPSSPNATLTTAASNSHHNQPTA
                     DVNQNPPATITPVQQNSSETQCSPNGTLDSKPNTPSADDGQRPVPAEEVRSSILLIDK
                     VSAPPSAASPFSREATPLSSSGPPAADLMSSSLLIGMQPSTLVASAEQEVSGHAAVTT
                     PTKVYSEVHLTLAKPASVVNRTARPFGMQSPGTTSQIEQSPMMGRRHFGEKAWAPPAS
                     SMADRSPQPQRHIMARSPMVERRLVGQRSPVVERRPLGNFTPPPTYAETLSTAPVASQ
                     VRSPPSYSTLYPSSDPKPPHLKGQVVPANKTGILEESMARRGSRKSMFTFVEKPKVTP
                     NPDLLDLVQTADEKRRQRDQGEVGMEDEPFALGAEASNFQQEPIARDRSGPAAAEETV
                     PEWASCLKSPRIQAKPKPKPNQNLSEASGKGAELYARRQSRMEKYVIESSGHAELARC
                     PSPTMSLPSSWKYTTNAPGGFRVASLSPARTPPASLYHGYLPENGVLRPEPTKQQPHQ
                     MRPSLYALSPVKEPAKISSRATSSRASSRTVSPRAASPAKPSSLDLVPNLPRAGLPPS
                     PALPRPSRSSPGLYNAPVQDSLQPTAVSPTYSSDISPVSPSRAWSPRAKQAPRPSFST
                     RNAGIEAQDRPESLPTSPPWTPGASRPPSSLDGWVSPGPWELGRGSSMGSPPPLPPPP
                     PMSPSWSERSVSPLRSEAEARPPSRQLQALLARNIINAARRKSASPRPAPAETLRPFS
                     PPQGPPPPPPPPRMRSPQPARPAGNFRGAAFSPIPRSPLPVGPSSCTSPRSPQAAPSR
                     PFPYRRSPTDSDVSLDSEDSGLKSPGILGYNICPRGWNGSLRLKRGSLPTEASCTT"
ORIGIN      
        1 cccaccttta cccttgagat agcccactct gaaggggcca tcatagcaga aggaaaccgt
       61 attggactac gtcattaccc agctcagaaa ggacttgcct tactcctcag ctggacctca
      121 ccccggcttc agcagaagag cacgtgaatc ttcggagaac ccaaggaggc cttgagaggg
      181 cccaggagca gtagtcacac aggccactca cttgtcctga gcgaggcagc ggctgctttg
      241 aactgccaag gagagccata atgctgggca ctcacttccc gcccccgccc cttggaccca
      301 gtgagggaag ggctgcccct tgcaccttcc agatcccgga tgggagctac cggtgcctgg
      361 ctctggaagc cgaggagagc agtagtgaag acggcttgca gggagaagtg aggctggtgg
      421 acttggaaga agaggggacc agcaagagca gagtcaacca tgggacacca ccactatcca
      481 gagccccagc cataatccag ccatccagct gttgcaggga ggcacgaggt ggtttccagc
      541 acagtgacaa gccaagccgt gagtgggatg tggtacaggc ccggaaagtg atgacagcca
      601 gcgtcagcag cagccctgtg cccagggtgg cccagaaacc agctttgggc cggagcacca
      661 gcttcacaga aaaggatctg aaggaggcca aggagaggag ccagcggatt gcagcccagc
      721 tcaccacccc tcccagctcc aactcccgag gggtccagct cttcaacagg cgcaggcaga
      781 gggtgaacga gttcaccttg gagagccgag gccagaggtc accaaagctc agccaagagg
      841 cccttcaaac agggcatcct tccagcccca taggccatgc cccagggctt agtgtgaatc
      901 ctacctctcc atcgaagcca ggctctccaa agcactccag ctcccaaagc cccagccgag
      961 gggtccctgg ccacatcatg gaggggtact cagaggaagc cagtctgctg cggcacctgg
     1021 agaaggttgc cagtgaggag gaagaagtac cattggtagt ttacttaaag gagaatgcag
     1081 ccctgctgac agctaatgga ctgcacctgt cccagaaccg agagacccag cagtcctcac
     1141 caaaccctcc tgaaacggag gaagtgccca gcccagctgc agatatcaac cagaacccct
     1201 cctctcccaa tgccacgctc accacagcag cctctaacag ccaccacaac caacccaccg
     1261 ctgatgtcaa tcaaaacccc ccagccacta tcacccctgt ccaacaaaat tcatctgaga
     1321 cacagtgttc cccgaatggc acgcttgatt ccaaacccaa cactccaagc gctgatgatg
     1381 ggcagcgccc ggtgccagca gaggaagtga ggtccagcat tctcctgatt gacaaggtgt
     1441 ccgctccacc atctgccgcc agccccttct ctagagaagc tactcccctc tccagctctg
     1501 ggccaccagc tgcagatctc atgtccagct ctctgctcat tggcatgcag cctagcaccc
     1561 tagtggcatc agcagaacaa gaggtgtctg gacatgcagc tgtcaccacg cccactaagg
     1621 tgtatagtga agtacatctc acactagcca agcctgcatc cgtggtcaac aggaccgcca
     1681 ggccatttgg gatgcagtcg ccagggacta ccagccagat agagcaaagt cccatgatgg
     1741 gaagacgaca ttttggagag aaggcctggg ctcccccagc tagcagtatg gcggatagga
     1801 gtccccagcc acagaggcac ataatggccc gcagtcccat ggtagaaagg aggctggttg
     1861 ggcagcgaag cccggttgta gagagacgcc ccttaggaaa ctttacccca ccccccacct
     1921 atgcggagac tttgtcaaca gcccccgtgg cttcccaggt taggtctcct ccctcttatt
     1981 ctactctgta tcccagctct gaccccaagc ctccccattt gaagggccag gtagttcctg
     2041 ccaacaagac aggaattttg gaagaatcta tggcacgccg aggcagccgg aaatcaatgt
     2101 tcacgttcgt ggagaagcct aaggtgacgc cgaatccaga cttgctggac ctcgtgcaga
     2161 cagctgatga gaagcggagg cagagagacc aaggggaggt gggcatggaa gacgagccct
     2221 ttgccctggg agctgaggcc tccaacttcc agcaggagcc aatagctcgg gacaggtccg
     2281 gccctgcggc agctgaggag actgtccctg aatgggcttc ctgcctcaag tcaccccgta
     2341 tccaggctaa gccgaagccc aaacccaacc agaatctctc agaggcctca gggaaggggg
     2401 ctgagctcta tgcccgccgc cagtcacgga tggagaaata cgtcatagag tcgtcaggcc
     2461 atgcggaatt ggctcgctgc ccttcaccta ctatgtcatt gccttcatcc tggaagtaca
     2521 ccactaatgc ccctgggggc ttccgagtgg cgtccttaag cccagcgcgg actccgcctg
     2581 cctctctcta ccacggctat ctgccagaga atggagtcct gcgcccagag cctaccaagc
     2641 agcagccaca ccagatgagg ccttcactct atgctctgtc gccggtcaag gaacctgcca
     2701 agatctcatc acgtgccacc tcgtcacgcg cttcgtcacg cactgtctca cctcgtgctg
     2761 cctccccggc caagcctagc tccctggacc tggtgcccaa cctgcccaga gcaggcctcc
     2821 caccgtctcc tgcgcttcct cggccttccc gctcctcccc aggcctctac aatgccccag
     2881 tccaggacag cctccagccc actgccgtga gccccaccta cagcagtgat atctcccccg
     2941 tgtctccctc cagggcgtgg tctcctcgag ccaagcaggc ccccaggcct tccttctcca
     3001 cccggaatgc tgggatcgag gcccaggacc gcccagagag cctgcccaca tccccgccct
     3061 ggacgccagg cgcttcccgg ccccctagca gcctagacgg ctgggtgagc ccggggccgt
     3121 gggagcttgg ccgcgggagc agcatgggca gccctccgcc gctgccgccg cctccaccaa
     3181 tgtccccctc ctggagcgag cgttccgtct ccccgctgcg atccgaggcc gaagcgcggc
     3241 ccccaagccg ccagctgcag gcgcttctgg cacgcaacat catcaacgcg gcccggcgca
     3301 agagcgcctc cccgcggcca gcgcccgccg agactctgcg gcccttttcc ccgccgcagg
     3361 ggccgccgcc gccgccgccg ccgccgcgca tgcgctctcc acagccagcc cgcccggcgg
     3421 gcaatttccg cggagctgct ttctccccta tcccgcggag cccgttgccc gttgggcctt
     3481 cgtcctgcac tagtccccgg agtcctcaag ccgcgccgtc caggcctttt ccctaccgcc
     3541 gctcacccac agactccgac gtgtctctcg attctgagga ctctgggctt aagtcgcccg
     3601 gcattctagg ctacaacatc tgtcctcggg gctggaatgg cagcctgagg ctcaagcgcg
     3661 gtagtctccc caccgaggcc tcttgcacca cctaaagttc catccccgcc ccgggagggt
     3721 cgagctggaa gaggcactaa gcttggggaa ccccagcacc gggatccgaa gggtctgacc
     3781 ccattggaca gctctagaga aaaggggggt caaggaagga gcgctctggg cttggggggc
     3841 tgtcagtcaa agggttgtag cccttggctc tgtcatttat ttgtatggct ctgaggaaga
     3901 gcctgtactg tagtctttga cccttagctt tggccaatgc agtctccaga atcttcccgt
     3961 tccttccata cacgcatgcc ttgggggcgg cagctaagca cacaaccatt ggccttcatc
     4021 atactaagct cccatgctct ttcctccaac actattctcc accgcctggc aaatgaagtg
     4081 tgtgttgaaa agaacctagg ccatgaccca tgtccaggct ccggcttgac cgtcggctcc
     4141 tggcaccaag tctcaggcag gagcagctgt tttccacctc ttctcagact agctctattt
     4201 ttatctggtg acctttaacg agatctccca ggcaagctca aggtgccctg ctgggcccct
     4261 ctagggagaa ggggctggaa gtttctcccg aggctctgcc gtgctgcttt ctctacccca
     4321 cccagctcag ggtgtctaga atatctcttc ggccagggca gagcaaagtg taaagttccc
     4381 tggggccatg ggtctcaaga atcccagacc catgcttttc tgggatcatt gatggctagt
     4441 tttaggtttt caaaaccggg aagagacgag atggcagtct aacacggcta ccctagtcta
     4501 gggtgtatta cctatttgga aaggggtcca tgttgcagaa tatgcaagtc atgcccagga
     4561 tgcgcggagg agactccggt attgggtaga gttgactcct gacctctgag gattcttgaa
     4621 actcactcca tagtattaga aagcaaggga gggtgaaggg ggaggttcac agggcttgaa
     4681 ttcagagaca aacatgggtg ggcagtcaag gggctactcc agtatggggc tgccatagtg
     4741 tctatattat gcgcagaaga atgggtattg ttatattcat tgtcttcaca tctctctctg
     4801 gcctggctca tacctgtatc agcctttgag gcatctgtcc ccttaacctc agtgactctg
     4861 ataccagtcc ccaagagtga gtcggggaag aatagctgag ttctgtggtt ttcatagtcg
     4921 atggacggta tcccttgaga ttccgagcag cagcttcaga attcagagcc tggggatggg
     4981 ggtgctggag tttgatgagg cacgcatata tgtaggtggg gaaaaaaata ccaggatgtt
     5041 gttaaaggta agggatgatg cgatttgggg ataattaata gatttaccca catatcaggg
     5101 tgatctagag ccccttagga aggctagggg aagctagggt caggatggaa taaagtcagg
     5161 gttggaatag acaagtgatc ttggtaggtc cctattgccc gtgggttaac caggccctgg
     5221 gaaatgagag agtacttagg tcctacctgg ggcagcgtcc cttgtagcta aggagtccca
     5281 ggctacgatg cctccaggag aagagaccct attagatatc tagtcaatgc tgtggcatac
     5341 acagatcagc ttctacctgc atttcctcag agaaccagca ggagtcagct ttgagaaact
     5401 acagttgttt ctgcagttgt catagcgacc accttctcac ttaaatagtc ttctctaaaa
     5461 cccacgacag cttgcctgta tcctgcctcg tgcctcttgt agaattcaga gcaataaatg
     5521 cgttctgcat tcttctg
//
