LOCUS       XM_017601015            5541 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus synaptopodin (Synpo), transcript
            variant X3, mRNA.
ACCESSION   XM_017601015
VERSION     XM_017601015.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017601015.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5541
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5541
                     /gene="Synpo"
                     /note="synaptopodin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 39 ESTs, 7 long
                     SRA reads, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 16 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:60324"
                     /db_xref="RGD:620668"
     CDS             265..3699
                     /gene="Synpo"
                     /codon_start=1
                     /product="synaptopodin isoform X1"
                     /protein_id="XP_017456504.1"
                     /db_xref="GeneID:60324"
                     /db_xref="RGD:620668"
                     /translation="MLGTHFPPPPLGPSEGRAAPCTFQIPDGSYRCLALEAEESSSED
                     GLQGEVRLVDLEEEGTSKSRVNHGTPPLSRAPAIIQPSSCCREARGGFQHSDKPSREW
                     DVVQARKVMTASVSSSPVPRVAQKPALGRSTSFTEKDLKEAKERSQRIAAQLTTPPSS
                     NSRGVQLFNRRRQRVNEFTLESRGQRSPKLSQEALQTGHPSSPIGHAPGLSVNPTSPS
                     KPGSPKHSSSQSPSRGVPGHIMEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAALL
                     TANGLHLSQNRETQQSSPNPPETEEVPSPAADINQNPSSPNATLTTAASNSHHNQPTA
                     DVNQNPPATITPVQQNSSETQCSPNGTLDSKPNTPSADDGQRPVPAEEVRSSILLIDK
                     VSAPPSAASPFSREATPLSSSGPPAADLMSSSLLIGMQPSTLVASAEQEVSGHAAVTT
                     PTKVYSEVHLTLAKPASVVNRTARPFGMQSPGTTSQIEQSPMMGRRHFGEKAWAPPAS
                     SMADRSPQPQRHIMARSPMVERRLVGQRSPVVERRPLGNFTPPPTYAETLSTAPVASQ
                     VRSPPSYSTLYPSSDPKPPHLKGQVVPANKTGILEESMARRGSRKSMFTFVEKPKVTP
                     NPDLLDLVQTADEKRRQRDQGEVGMEDEPFALGAEASNFQQEPIARDRSGPAAAEETV
                     PEWASCLKSPRIQAKPKPKPNQNLSEASGKGAELYARRQSRMEKYVIESSGHAELARC
                     PSPTMSLPSSWKYTTNAPGGFRVASLSPARTPPASLYHGYLPENGVLRPEPTKQQPHQ
                     MRPSLYALSPVKEPAKISSRATSSRASSRTVSPRAASPAKPSSLDLVPNLPRAGLPPS
                     PALPRPSRSSPGLYNAPVQDSLQPTAVSPTYSSDISPVSPSRAWSPRAKQAPRPSFST
                     RNAGIEAQDRPESLPTSPPWTPGASRPPSSLDGWVSPGPWELGRGSSMGSPPPLPPPP
                     PMSPSWSERSVSPLRSEAEARPPSRQLQALLARNIINAARRKSASPRPAPAETLRPFS
                     PPQGPPPPPPPPRMRSPQPARPAGNFRGAAFSPIPRSPLPVGPSSCTSPRSPQAAPSR
                     PFPYRRSPTDSDVSLDSEDSGLKSPGILGYNICPRGWNGSLRLKRGSLPTEASCTT"
ORIGIN      
        1 ggacagtggc aaaaaaaacg agatagccca ctctgaaggg gccatcatag cagaaggaaa
       61 ccgtattgga ctacgtcatt acccagctca gaaaggactt gccttactcc tcagctggac
      121 ctcaccccgg cttcagcaga agagcacgtg aatcttcgga gaacccaagg aggccttgag
      181 agggcccagg agcagtagtc acacaggcca ctcacttgtc ctgagcgagg cagcggctgc
      241 tttgaactgc caaggagagc cataatgctg ggcactcact tcccgccccc gccccttgga
      301 cccagtgagg gaagggctgc cccttgcacc ttccagatcc cggatgggag ctaccggtgc
      361 ctggctctgg aagccgagga gagcagtagt gaagacggct tgcagggaga agtgaggctg
      421 gtggacttgg aagaagaggg gaccagcaag agcagagtca accatgggac accaccacta
      481 tccagagccc cagccataat ccagccatcc agctgttgca gggaggcacg aggtggtttc
      541 cagcacagtg acaagccaag ccgtgagtgg gatgtggtac aggcccggaa agtgatgaca
      601 gccagcgtca gcagcagccc tgtgcccagg gtggcccaga aaccagcttt gggccggagc
      661 accagcttca cagaaaagga tctgaaggag gccaaggaga ggagccagcg gattgcagcc
      721 cagctcacca cccctcccag ctccaactcc cgaggggtcc agctcttcaa caggcgcagg
      781 cagagggtga acgagttcac cttggagagc cgaggccaga ggtcaccaaa gctcagccaa
      841 gaggcccttc aaacagggca tccttccagc cccataggcc atgccccagg gcttagtgtg
      901 aatcctacct ctccatcgaa gccaggctct ccaaagcact ccagctccca aagccccagc
      961 cgaggggtcc ctggccacat catggagggg tactcagagg aagccagtct gctgcggcac
     1021 ctggagaagg ttgccagtga ggaggaagaa gtaccattgg tagtttactt aaaggagaat
     1081 gcagccctgc tgacagctaa tggactgcac ctgtcccaga accgagagac ccagcagtcc
     1141 tcaccaaacc ctcctgaaac ggaggaagtg cccagcccag ctgcagatat caaccagaac
     1201 ccctcctctc ccaatgccac gctcaccaca gcagcctcta acagccacca caaccaaccc
     1261 accgctgatg tcaatcaaaa ccccccagcc actatcaccc ctgtccaaca aaattcatct
     1321 gagacacagt gttccccgaa tggcacgctt gattccaaac ccaacactcc aagcgctgat
     1381 gatgggcagc gcccggtgcc agcagaggaa gtgaggtcca gcattctcct gattgacaag
     1441 gtgtccgctc caccatctgc cgccagcccc ttctctagag aagctactcc cctctccagc
     1501 tctgggccac cagctgcaga tctcatgtcc agctctctgc tcattggcat gcagcctagc
     1561 accctagtgg catcagcaga acaagaggtg tctggacatg cagctgtcac cacgcccact
     1621 aaggtgtata gtgaagtaca tctcacacta gccaagcctg catccgtggt caacaggacc
     1681 gccaggccat ttgggatgca gtcgccaggg actaccagcc agatagagca aagtcccatg
     1741 atgggaagac gacattttgg agagaaggcc tgggctcccc cagctagcag tatggcggat
     1801 aggagtcccc agccacagag gcacataatg gcccgcagtc ccatggtaga aaggaggctg
     1861 gttgggcagc gaagcccggt tgtagagaga cgccccttag gaaactttac cccacccccc
     1921 acctatgcgg agactttgtc aacagccccc gtggcttccc aggttaggtc tcctccctct
     1981 tattctactc tgtatcccag ctctgacccc aagcctcccc atttgaaggg ccaggtagtt
     2041 cctgccaaca agacaggaat tttggaagaa tctatggcac gccgaggcag ccggaaatca
     2101 atgttcacgt tcgtggagaa gcctaaggtg acgccgaatc cagacttgct ggacctcgtg
     2161 cagacagctg atgagaagcg gaggcagaga gaccaagggg aggtgggcat ggaagacgag
     2221 ccctttgccc tgggagctga ggcctccaac ttccagcagg agccaatagc tcgggacagg
     2281 tccggccctg cggcagctga ggagactgtc cctgaatggg cttcctgcct caagtcaccc
     2341 cgtatccagg ctaagccgaa gcccaaaccc aaccagaatc tctcagaggc ctcagggaag
     2401 ggggctgagc tctatgcccg ccgccagtca cggatggaga aatacgtcat agagtcgtca
     2461 ggccatgcgg aattggctcg ctgcccttca cctactatgt cattgccttc atcctggaag
     2521 tacaccacta atgcccctgg gggcttccga gtggcgtcct taagcccagc gcggactccg
     2581 cctgcctctc tctaccacgg ctatctgcca gagaatggag tcctgcgccc agagcctacc
     2641 aagcagcagc cacaccagat gaggccttca ctctatgctc tgtcgccggt caaggaacct
     2701 gccaagatct catcacgtgc cacctcgtca cgcgcttcgt cacgcactgt ctcacctcgt
     2761 gctgcctccc cggccaagcc tagctccctg gacctggtgc ccaacctgcc cagagcaggc
     2821 ctcccaccgt ctcctgcgct tcctcggcct tcccgctcct ccccaggcct ctacaatgcc
     2881 ccagtccagg acagcctcca gcccactgcc gtgagcccca cctacagcag tgatatctcc
     2941 cccgtgtctc cctccagggc gtggtctcct cgagccaagc aggcccccag gccttccttc
     3001 tccacccgga atgctgggat cgaggcccag gaccgcccag agagcctgcc cacatccccg
     3061 ccctggacgc caggcgcttc ccggccccct agcagcctag acggctgggt gagcccgggg
     3121 ccgtgggagc ttggccgcgg gagcagcatg ggcagccctc cgccgctgcc gccgcctcca
     3181 ccaatgtccc cctcctggag cgagcgttcc gtctccccgc tgcgatccga ggccgaagcg
     3241 cggcccccaa gccgccagct gcaggcgctt ctggcacgca acatcatcaa cgcggcccgg
     3301 cgcaagagcg cctccccgcg gccagcgccc gccgagactc tgcggccctt ttccccgccg
     3361 caggggccgc cgccgccgcc gccgccgccg cgcatgcgct ctccacagcc agcccgcccg
     3421 gcgggcaatt tccgcggagc tgctttctcc cctatcccgc ggagcccgtt gcccgttggg
     3481 ccttcgtcct gcactagtcc ccggagtcct caagccgcgc cgtccaggcc ttttccctac
     3541 cgccgctcac ccacagactc cgacgtgtct ctcgattctg aggactctgg gcttaagtcg
     3601 cccggcattc taggctacaa catctgtcct cggggctgga atggcagcct gaggctcaag
     3661 cgcggtagtc tccccaccga ggcctcttgc accacctaaa gttccatccc cgccccggga
     3721 gggtcgagct ggaagaggca ctaagcttgg ggaaccccag caccgggatc cgaagggtct
     3781 gaccccattg gacagctcta gagaaaaggg gggtcaagga aggagcgctc tgggcttggg
     3841 gggctgtcag tcaaagggtt gtagcccttg gctctgtcat ttatttgtat ggctctgagg
     3901 aagagcctgt actgtagtct ttgaccctta gctttggcca atgcagtctc cagaatcttc
     3961 ccgttccttc catacacgca tgccttgggg gcggcagcta agcacacaac cattggcctt
     4021 catcatacta agctcccatg ctctttcctc caacactatt ctccaccgcc tggcaaatga
     4081 agtgtgtgtt gaaaagaacc taggccatga cccatgtcca ggctccggct tgaccgtcgg
     4141 ctcctggcac caagtctcag gcaggagcag ctgttttcca cctcttctca gactagctct
     4201 atttttatct ggtgaccttt aacgagatct cccaggcaag ctcaaggtgc cctgctgggc
     4261 ccctctaggg agaaggggct ggaagtttct cccgaggctc tgccgtgctg ctttctctac
     4321 cccacccagc tcagggtgtc tagaatatct cttcggccag ggcagagcaa agtgtaaagt
     4381 tccctggggc catgggtctc aagaatccca gacccatgct tttctgggat cattgatggc
     4441 tagttttagg ttttcaaaac cgggaagaga cgagatggca gtctaacacg gctaccctag
     4501 tctagggtgt attacctatt tggaaagggg tccatgttgc agaatatgca agtcatgccc
     4561 aggatgcgcg gaggagactc cggtattggg tagagttgac tcctgacctc tgaggattct
     4621 tgaaactcac tccatagtat tagaaagcaa gggagggtga agggggaggt tcacagggct
     4681 tgaattcaga gacaaacatg ggtgggcagt caaggggcta ctccagtatg gggctgccat
     4741 agtgtctata ttatgcgcag aagaatgggt attgttatat tcattgtctt cacatctctc
     4801 tctggcctgg ctcatacctg tatcagcctt tgaggcatct gtccccttaa cctcagtgac
     4861 tctgatacca gtccccaaga gtgagtcggg gaagaatagc tgagttctgt ggttttcata
     4921 gtcgatggac ggtatccctt gagattccga gcagcagctt cagaattcag agcctgggga
     4981 tgggggtgct ggagtttgat gaggcacgca tatatgtagg tggggaaaaa aataccagga
     5041 tgttgttaaa ggtaagggat gatgcgattt ggggataatt aatagattta cccacatatc
     5101 agggtgatct agagcccctt aggaaggcta ggggaagcta gggtcaggat ggaataaagt
     5161 cagggttgga atagacaagt gatcttggta ggtccctatt gcccgtgggt taaccaggcc
     5221 ctgggaaatg agagagtact taggtcctac ctggggcagc gtcccttgta gctaaggagt
     5281 cccaggctac gatgcctcca ggagaagaga ccctattaga tatctagtca atgctgtggc
     5341 atacacagat cagcttctac ctgcatttcc tcagagaacc agcaggagtc agctttgaga
     5401 aactacagtt gtttctgcag ttgtcatagc gaccaccttc tcacttaaat agtcttctct
     5461 aaaacccacg acagcttgcc tgtatcctgc ctcgtgcctc ttgtagaatt cagagcaata
     5521 aatgcgttct gcattcttct g
//
