LOCUS       NM_001025644            1623 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus synaptogyrin 4 (Syngr4), mRNA.
ACCESSION   NM_001025644 XM_218572
VERSION     NM_001025644.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1623)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC098938.1.
            
            On Jul 22, 2005 this sequence version replaced XM_218572.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098938.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..1623
                     /gene="Syngr4"
                     /note="synaptogyrin 4"
                     /db_xref="GeneID:292916"
                     /db_xref="RGD:1307737"
     exon            1..113
                     /gene="Syngr4"
                     /inference="alignment:Splign:2.1.0"
     exon            114..314
                     /gene="Syngr4"
                     /inference="alignment:Splign:2.1.0"
     CDS             222..926
                     /gene="Syngr4"
                     /codon_start=1
                     /product="synaptogyrin-4"
                     /protein_id="NP_001020815.1"
                     /db_xref="GeneID:292916"
                     /db_xref="RGD:1307737"
                     /translation="MHLPESLQDLADSETVRFLRRPKSVSRIFGGVFSLVIFSSLLTD
                     GYQNRTESPQLRCVLNSNHMACSFAVGAGFLSFLSCLVFLAVDAHESRMVGTRFKTAF
                     QLLDFILAVLWAGVWFVAFCFLASQWQHSKSKHFLLGSSSAKAAIAFSFFSVPVWILQ
                     AYLAFQDLREEAPVPYKRSLEEGSVVLNTLSPSSTTSPANPTVTGPNSLSYSSSALSP
                     YMTAPKAPRLAMMPDS"
     exon            315..552
                     /gene="Syngr4"
                     /inference="alignment:Splign:2.1.0"
     exon            553..692
                     /gene="Syngr4"
                     /inference="alignment:Splign:2.1.0"
     exon            693..1597
                     /gene="Syngr4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaggaaccaa aaggaggcta gaagtggctc ccgggagcag aagaggaagc caggcagaca
       61 gaagagtcta ccctcccaga gaggagcact ggtcctcggc cctcggagaa tagcagctga
      121 accctgaggt gggcctgagg cacacaggca gtggcaccca gaaagcagca cccaacagcc
      181 ctgctccttc ttcccaggac actcaaagaa gagcagccac tatgcacctc cccgaaagcc
      241 tgcaggacct ggcagacagt gagactgtgc gctttctgag gagaccaaag agcgtctcaa
      301 ggatcttcgg aggggtcttt tccctggtca tcttttcctc tctactaact gatggttacc
      361 agaataggac ggagtctcct cagctccgct gcgtactcaa cagcaaccac atggcctgta
      421 gctttgcagt gggagctggc ttcctgtcct ttcttagctg cttggtcttc cttgccgtag
      481 acgcccatga gagccgcatg gtaggcaccc gctttaagac agccttccag ctcctggact
      541 tcattctggc tgtcctctgg gcaggtgtct ggtttgtggc cttctgcttc ctagccagcc
      601 agtggcagca ttcgaagtcc aagcacttcc tcttggggag cagcagcgcc aaggcagcca
      661 ttgccttttc tttcttctcc gtccccgtct ggatactcca ggcctaccta gccttccagg
      721 acctccgaga agaggctcca gtcccctaca agcgctccct ggaggagggt agtgtggtgc
      781 tgaacaccct ctctccatca tccaccacta gccccgccaa ccctaccgtc acaggcccca
      841 acagtctgag ttacagcagc tcagccctgt ccccctacat gactgctcca aaggccccac
      901 gcctggccat gatgccagac agctaaacag cctgagtaca cgagtaaacg gcccctccca
      961 ggggtttctg aacaaccctg tcctgtctgt tcctctctca cccttgagtg gcaggaggag
     1021 gagggagacc cctgccacag gtacatttct actcccaagt agtcaccctg ttgagacagg
     1081 acaccctgcc atgtcacctg cgccttgagc ccacactggc cttgaggagg gggcacaaag
     1141 gcttcatgct acatctgagg ctgaggctga gggagaaaag actgtctcct cagagtacca
     1201 gtgagaaaga gtgcagccct ggcccagcag cccacggtct tcacccccat agagatgaag
     1261 gcagtcaaca gcaatgtaag ggctcagtca gggcgccgag gccatggatg agaccaactc
     1321 aggggagaat caaatacatc caaggctatc atgggagaca ggcaagtgtt ctagaccccc
     1381 ccaggtcacc aggccacaca cctgctgaga gggatcagca atggctcctt gtaccagaga
     1441 gatgatcttt acccaccacc cagccaaggg gctgaggaca cagaaactct caaggtttca
     1501 ttgagaaaag aaacaagtta gtttttaata tatttcattt aacttaatat atccaatgtg
     1561 ttaactgttg taacaaataa tcaatatgaa aattcaaaaa aaaaaaaaaa aaaaaaaaaa
     1621 aaa
//
