LOCUS       NM_001106985            1996 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus synaptogyrin 3 (Syngr3), mRNA.
ACCESSION   NM_001106985 XM_001058239 XM_006245947 XM_220220
VERSION     NM_001106985.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1996)
  AUTHORS   Chen,S., Lu,F.F., Seeman,P. and Liu,F.
  TITLE     Quantitative proteomic analysis of human substantia nigra in
            Alzheimer's disease, Huntington's disease and Multiple sclerosis
  JOURNAL   Neurochem Res 37 (12), 2805-2813 (2012)
   PUBMED   22926577
REFERENCE   2  (bases 1 to 1996)
  AUTHORS   Egana,L.A., Cuevas,R.A., Baust,T.B., Parra,L.A., Leak,R.K.,
            Hochendoner,S., Pena,K., Quiroz,M., Hong,W.C., Dorostkar,M.M.,
            Janz,R., Sitte,H.H. and Torres,G.E.
  TITLE     Physical and functional interaction between the dopamine
            transporter and the synaptic vesicle protein synaptogyrin-3
  JOURNAL   J Neurosci 29 (14), 4592-4604 (2009)
   PUBMED   19357284
REFERENCE   3  (bases 1 to 1996)
  AUTHORS   Felkl,M. and Leube,R.E.
  TITLE     Interaction assays in yeast and cultured cells confirm known and
            identify novel partners of the synaptic vesicle protein
            synaptophysin
  JOURNAL   Neuroscience 156 (2), 344-352 (2008)
   PUBMED   18706977
REFERENCE   4  (bases 1 to 1996)
  AUTHORS   Belizaire,R., Komanduri,C., Wooten,K., Chen,M., Thaller,C. and
            Janz,R.
  TITLE     Characterization of synaptogyrin 3 as a new synaptic vesicle
            protein
  JOURNAL   J Comp Neurol 470 (3), 266-281 (2004)
   PUBMED   14755516
REFERENCE   5  (bases 1 to 1996)
  AUTHORS   Sugita,S., Janz,R. and Sudhof,T.C.
  TITLE     Synaptogyrins regulate Ca2+-dependent exocytosis in PC12 cells
  JOURNAL   J Biol Chem 274 (27), 18893-18901 (1999)
   PUBMED   10383386
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On or before Jun 3, 2021 this sequence version replaced
            XM_006245947.4, NM_001106985.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1082196.1, FQ098915.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840109,
                                           SAMN12840110 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-233               JAXUCZ010000010.1  14219612-14219844   c
            234-471             JAXUCZ010000010.1  14217230-14217467   c
            472-614             JAXUCZ010000010.1  14216547-14216689   c
            615-1996            JAXUCZ010000010.1  14215088-14216469   c
FEATURES             Location/Qualifiers
     source          1..1996
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..1996
                     /gene="Syngr3"
                     /note="synaptogyrin 3"
                     /db_xref="GeneID:302975"
                     /db_xref="RGD:1311801"
     exon            1..233
                     /gene="Syngr3"
                     /inference="alignment:Splign:2.1.0"
     CDS             135..824
                     /gene="Syngr3"
                     /codon_start=1
                     /product="synaptogyrin-3"
                     /protein_id="NP_001100455.2"
                     /db_xref="GeneID:302975"
                     /db_xref="RGD:1311801"
                     /translation="MEGASFGAGRAGAAFDPVSFAQRPQTLLRVVSWVFSIAVFGPIV
                     NEGYVNSDSGPELRCVFNGNAGACRFGVVLGLGAFIACVAFLLLDVRFQQISSVRDRR
                     RAVLLDLGFSGVWSFLWFVGFCFLTNQWQRTAPGPGTAQAGDAARAAIAFSFFSILSW
                     VALTVKALQRFRLGTDMSLFATDQLGTGAAQAYPGYPVGSGVEGTETYQSPPFTETLD
                     TSPKGYQVPAY"
     exon            234..471
                     /gene="Syngr3"
                     /inference="alignment:Splign:2.1.0"
     exon            472..614
                     /gene="Syngr3"
                     /inference="alignment:Splign:2.1.0"
     exon            615..1996
                     /gene="Syngr3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agccgacgcg cgctcccggg aggcggcggc agaggcagca gcatccacag catcagcagc
       61 ctcagcatca gccctgggag gtctccggca gggcaggccg gtgggacaaa cggacagaag
      121 gcacaggtcc cgcaatggaa ggagcatcct ttggcgcggg ccgtgcggga gctgcctttg
      181 atcccgtgag ctttgcgcag cggccccaga ccctgttgcg ggtcgtgtcc tgggtgtttt
      241 ctatagccgt gttcgggccg attgtcaatg agggctacgt gaactcggac agcggtccag
      301 aactgcgctg cgtcttcaat ggaaacgcgg gagcctgccg cttcggcgtc gtactaggtc
      361 taggggcttt catcgcctgc gtggccttcc tgctgctgga cgtgcgcttt cagcagatca
      421 gcagcgtccg agaccgccgt cgtgcagtgc tactggatct gggcttctca ggggtctggt
      481 ccttcctgtg gttcgtaggc ttctgtttcc tcaccaatca gtggcaacgt acagcaccag
      541 ggccaggcac cgcgcaggct ggggatgcgg cacgtgccgc catcgctttc agcttcttct
      601 ccatcctcag ctgggtggcg ctcaccgtga aggccctgca gcggttccgt ctaggcaccg
      661 atatgtctct ctttgccaca gatcagctag gtactggggc tgcccaggcc tacccaggct
      721 acccagtggg cagtggtgtg gagggcacag aaacatacca gagcccgccc ttcactgaga
      781 ccctggacac cagccccaaa gggtaccagg tgcctgccta ttagtaggtg ttaggctctg
      841 gccagggctg gaaggccacc tcaccatctt aggcctcaag gcctcctgag acctttcctg
      901 ggtcctaccg tgccagggac agagaaggtg gccactgtgg gcctctggga ccaaggggag
      961 taccctccct ggggtgcctg gactgtccgc acaaagttcc ccctagccag agatctcagt
     1021 cttaaggccc tgagaagaaa acagtacctc ctggagtgga ctggcctggg aggcatttct
     1081 ttcatgggcc agccaaccag gggctcacct gtccactcta gggtcagtag tccagctgcc
     1141 ttccagggca ggatgcaagg gcttctgggg accagggaga ggaagactaa ttgtaccctt
     1201 aggtgggggt tatgaccctc gttcccagtc ccatgtccct gtgggtggca gtgactgccg
     1261 tggctcctgt catggtggtc caccctgtcc agaggctccc tccactcctc ttgcaggatc
     1321 cctagagcag ctcagccctg tcggtgttgt gattgtgatt aagtcttaag gtctcacctc
     1381 atagtgcccc cataagctgc ccctctctgt gtggctcctg cccaggcgtg ggtgcttctg
     1441 gccaggaagg tatagaccgc tatgggcctg ggcacctgcc cttcagttag acattcccta
     1501 gggaactgat agctgggtgc ctgggtgcca ggcaagacaa gtctcttaca aggagaggac
     1561 taaaggtctc atctgcccag ggtgtcacta aagagagtcg ttcctataaa tggcttaacc
     1621 ttggcttcct gaacaagtcc ctccccagtc tatccccttt taagacccag accaggtgtg
     1681 ggtccttgtg cgtagctgac tactcatgca ttgcttgaag ctggcttttc atatcaagtc
     1741 aaaaccaaac gcgttgccat atctcatcct tccagacaaa atgcctccct gtggagttgc
     1801 agttgaatga caacccctgt acgttgtagc atagaccaat tatgtggata tttaagtgaa
     1861 tatgtttaca atttttgtat atatgggatc tattcctctc tcttctgaaa gaacaatccg
     1921 tgattgtgta ttttcagtgt cccctgtcac aactgcaacg tctttacaat aaagactgta
     1981 aatgcattga ccatga
//
