LOCUS       NM_001415792            1317 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus spectrin repeat containing nuclear envelope
            family member 4 (Syne4), transcript variant 1, mRNA.
ACCESSION   NM_001415792 XM_003748822
VERSION     NM_001415792.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1317)
  AUTHORS   Roux,K.J., Crisp,M.L., Liu,Q., Kim,D., Kozlov,S., Stewart,C.L. and
            Burke,B.
  TITLE     Nesprin 4 is an outer nuclear membrane protein that can induce
            kinesin-mediated cell polarization
  JOURNAL   Proc Natl Acad Sci U S A 106 (7), 2194-2199 (2009)
   PUBMED   19164528
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Dec 30, 2022 this sequence version replaced XM_003748822.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.1992.1,
                                           SRR26360176.976834.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-233               JAXUCZ010000001.1  94696985-94697217
            234-372             JAXUCZ010000001.1  94697370-94697508
            373-516             JAXUCZ010000001.1  94698404-94698547
            517-711             JAXUCZ010000001.1  94698738-94698932
            712-960             JAXUCZ010000001.1  94699008-94699256
            961-1035            JAXUCZ010000001.1  94700152-94700226
            1036-1094           JAXUCZ010000001.1  94700857-94700915
            1095-1317           JAXUCZ010000001.1  94701008-94701230
FEATURES             Location/Qualifiers
     source          1..1317
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..1317
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /note="spectrin repeat containing nuclear envelope family
                     member 4"
                     /db_xref="GeneID:292781"
                     /db_xref="RGD:1304580"
     exon            1..233
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             106..1272
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /note="isoform 1 is encoded by transcript variant 1; KASH
                     domain-containing protein C19orf46 homolog; nesprin-4;
                     nuclear envelope spectrin repeat protein 4; KASH
                     domain-containing protein 4; spectrin repeat containing,
                     nuclear envelope family member 4-like 1"
                     /codon_start=1
                     /product="nesprin-4 isoform 1"
                     /protein_id="NP_001402721.1"
                     /db_xref="GeneID:292781"
                     /db_xref="RGD:1304580"
                     /translation="MAQFPLLGHGFPPEPVNHPLGGPRGLDVAGPTICPAPEEEPSRP
                     EQVQASLDAPEHFMDEPKSTESATSPSKLPLASSHEHQDGGKPCEHSVSGLEVLEAEQ
                     DSLHLCLLGLKFRLQDLEQGLASWTLAHNRIVQLQALQAELQGAAERVDALLVFGEGL
                     AERSEPRAWTSLEQVLRALGTHRDTIFQRLWQLQAQLISYSLVLEKANLLDQDLEVEG
                     DSDGPAAGGVWGPWAPSIFPTPAELEWDPAGDVGGLGPSGQKISRIPGAPCELCGYRG
                     SQSSGQGFEDLLSLGLGHRKHLAAHHRRRLQKPQDKKRQGPPSLPDAMLEVDRGVPAP
                     ASRRPLTFLLLLLFLLLVGATLLLPLSGVPCCSHTRLARTPYLVLSYVNGLPPI"
     exon            234..372
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /inference="alignment:Splign:2.1.0"
     exon            373..516
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /inference="alignment:Splign:2.1.0"
     exon            517..711
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /inference="alignment:Splign:2.1.0"
     exon            712..960
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /inference="alignment:Splign:2.1.0"
     exon            961..1035
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1036..1094
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1095..1317
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtagcctcg gtcctgggta agtcctgcta agaaagcatg ggacactgtc taagaaagag
       61 gctgttactg gacatcctca cctgactatc cccaagtgca cagccatggc ccagtttcca
      121 cttcttggcc atggattccc tccagagcct gtgaatcacc ccctgggagg tcctaggggg
      181 ctggacgttg ccggacctac catctgccct gcacctgagg aggagccgag caggccagag
      241 caggtccagg cctccttgga cgcgcctgag catttcatgg atgaaccgaa gagcactgag
      301 tctgccacca gcccctcaaa actacccctg gcctcttccc atgagcatca agatgggggc
      361 aagccctgtg agcactccgt ctctggtctg gaagtactag aagctgaaca ggacagccta
      421 catctttgtc tgttggggtt gaagttccgg ctgcaggacc tggaacaagg ccttgcatct
      481 tggacgctgg cccacaacag gattgtccag ctgcaggccc tgcaggcaga gctccaaggg
      541 gcagccgaac gtgtggatgc attgcttgta tttggtgagg gcctggcaga gaggagtgag
      601 cccagagcct ggacatccct ggagcaggtc ctgagggccc ttggaaccca tcgagacacc
      661 atcttccaac ggctctggca gctgcaggcc cagttgatca gctatagcct ggtgcttgag
      721 aaggccaacc tactggacca ggacttggaa gttgagggag actcagacgg gccagcagct
      781 ggtggagtct gggggccctg ggcacccagt atcttcccca ctcctgcaga gttggagtgg
      841 gacccagcag gggatgttgg gggtcttgga ccctcagggc aaaagatatc tcggatacca
      901 ggagctccct gtgagctgtg tggctacagg ggatcccaga gcagtggaca gggctttgag
      961 gacctgctct cactggggct tggccaccgg aaacatttgg cggctcacca tcgaaggcgt
     1021 ctccagaagc ctcaggacaa gaagaggcaa ggacctccta gtctgcccga tgcgatgctg
     1081 gaagtggatc gtggggtccc agctcctgca tccaggcggc ccctgacctt cctccttctc
     1141 cttctcttcc tccttctggt gggtgccaca ttgttgctgc ccttgtcggg ggtcccctgc
     1201 tgttctcata cccggctggc caggacgccc tacctggtgc tcagctatgt caatgggctc
     1261 cctccaatct gagtccacca gcccagacat gtgcattaaa tgttcactct caagaga
//
