LOCUS       NM_001009283            1173 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus spectrin repeat containing nuclear envelope
            family member 4 (Syne4), transcript variant 2, mRNA.
ACCESSION   NM_001009283 XM_238097
VERSION     NM_001009283.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1173)
  AUTHORS   Roux,K.J., Crisp,M.L., Liu,Q., Kim,D., Kozlov,S., Stewart,C.L. and
            Burke,B.
  TITLE     Nesprin 4 is an outer nuclear membrane protein that can induce
            kinesin-mediated cell polarization
  JOURNAL   Proc Natl Acad Sci U S A 106 (7), 2194-2199 (2009)
   PUBMED   19164528
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Dec 30, 2022 this sequence version replaced NM_001009283.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088237.1, SRR22582416.716980.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-233               JAXUCZ010000001.1  94696985-94697217
            234-372             JAXUCZ010000001.1  94697370-94697508
            373-567             JAXUCZ010000001.1  94698738-94698932
            568-816             JAXUCZ010000001.1  94699008-94699256
            817-891             JAXUCZ010000001.1  94700152-94700226
            892-950             JAXUCZ010000001.1  94700857-94700915
            951-1173            JAXUCZ010000001.1  94701008-94701230
FEATURES             Location/Qualifiers
     source          1..1173
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..1173
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /note="spectrin repeat containing nuclear envelope family
                     member 4"
                     /db_xref="GeneID:292781"
                     /db_xref="RGD:1304580"
     exon            1..233
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             106..1128
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /note="isoform 2 is encoded by transcript variant 2; KASH
                     domain-containing protein C19orf46 homolog; nesprin-4;
                     nuclear envelope spectrin repeat protein 4; KASH
                     domain-containing protein 4; spectrin repeat containing,
                     nuclear envelope family member 4-like 1"
                     /codon_start=1
                     /product="nesprin-4 isoform 2"
                     /protein_id="NP_001009283.1"
                     /db_xref="GeneID:292781"
                     /db_xref="RGD:1304580"
                     /translation="MAQFPLLGHGFPPEPVNHPLGGPRGLDVAGPTICPAPEEEPSRP
                     EQVQASLDAPEHFMDEPKSTESATSPSKLPLASSHEHQDGGKPCEALQAELQGAAERV
                     DALLVFGEGLAERSEPRAWTSLEQVLRALGTHRDTIFQRLWQLQAQLISYSLVLEKAN
                     LLDQDLEVEGDSDGPAAGGVWGPWAPSIFPTPAELEWDPAGDVGGLGPSGQKISRIPG
                     APCELCGYRGSQSSGQGFEDLLSLGLGHRKHLAAHHRRRLQKPQDKKRQGPPSLPDAM
                     LEVDRGVPAPASRRPLTFLLLLLFLLLVGATLLLPLSGVPCCSHTRLARTPYLVLSYV
                     NGLPPI"
     exon            234..372
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /inference="alignment:Splign:2.1.0"
     exon            373..567
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /inference="alignment:Splign:2.1.0"
     exon            568..816
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /inference="alignment:Splign:2.1.0"
     exon            817..891
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /inference="alignment:Splign:2.1.0"
     exon            892..950
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /inference="alignment:Splign:2.1.0"
     exon            951..1173
                     /gene="Syne4"
                     /gene_synonym="KASH4; RGD1304580; Syne4l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtagcctcg gtcctgggta agtcctgcta agaaagcatg ggacactgtc taagaaagag
       61 gctgttactg gacatcctca cctgactatc cccaagtgca cagccatggc ccagtttcca
      121 cttcttggcc atggattccc tccagagcct gtgaatcacc ccctgggagg tcctaggggg
      181 ctggacgttg ccggacctac catctgccct gcacctgagg aggagccgag caggccagag
      241 caggtccagg cctccttgga cgcgcctgag catttcatgg atgaaccgaa gagcactgag
      301 tctgccacca gcccctcaaa actacccctg gcctcttccc atgagcatca agatgggggc
      361 aagccctgtg aggccctgca ggcagagctc caaggggcag ccgaacgtgt ggatgcattg
      421 cttgtatttg gtgagggcct ggcagagagg agtgagccca gagcctggac atccctggag
      481 caggtcctga gggcccttgg aacccatcga gacaccatct tccaacggct ctggcagctg
      541 caggcccagt tgatcagcta tagcctggtg cttgagaagg ccaacctact ggaccaggac
      601 ttggaagttg agggagactc agacgggcca gcagctggtg gagtctgggg gccctgggca
      661 cccagtatct tccccactcc tgcagagttg gagtgggacc cagcagggga tgttgggggt
      721 cttggaccct cagggcaaaa gatatctcgg ataccaggag ctccctgtga gctgtgtggc
      781 tacaggggat cccagagcag tggacagggc tttgaggacc tgctctcact ggggcttggc
      841 caccggaaac atttggcggc tcaccatcga aggcgtctcc agaagcctca ggacaagaag
      901 aggcaaggac ctcctagtct gcccgatgcg atgctggaag tggatcgtgg ggtcccagct
      961 cctgcatcca ggcggcccct gaccttcctc cttctccttc tcttcctcct tctggtgggt
     1021 gccacattgt tgctgccctt gtcgggggtc ccctgctgtt ctcatacccg gctggccagg
     1081 acgccctacc tggtgctcag ctatgtcaat gggctccctc caatctgagt ccaccagccc
     1141 agacatgtgc attaaatgtt cactctcaag aga
//
