LOCUS       NM_001109485            1763 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus synapse differentiation inducing 1-like
            (Syndig1l), mRNA.
ACCESSION   NM_001109485 XM_001065617
VERSION     NM_001109485.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1763)
  AUTHORS   de Chaldee,M., Brochier,C., Van de Vel,A., Caudy,N.,
            Luthi-Carter,R., Gaillard,M.C. and Elalouf,J.M.
  TITLE     Capucin: a novel striatal marker down-regulated in rodent models of
            Huntington disease
  JOURNAL   Genomics 87 (2), 200-207 (2006)
   PUBMED   16359841
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473982.1.
            
            On Oct 4, 2007 this sequence version replaced XM_001065617.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760393, SAMEA5760396
                              [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1763
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q31"
     gene            1..1763
                     /gene="Syndig1l"
                     /gene_synonym="Tmem90a"
                     /note="synapse differentiation inducing 1-like"
                     /db_xref="GeneID:685882"
                     /db_xref="RGD:1589004"
     exon            1..282
                     /gene="Syndig1l"
                     /gene_synonym="Tmem90a"
                     /inference="alignment:Splign:2.1.0"
     exon            283..383
                     /gene="Syndig1l"
                     /gene_synonym="Tmem90a"
                     /inference="alignment:Splign:2.1.0"
     exon            384..857
                     /gene="Syndig1l"
                     /gene_synonym="Tmem90a"
                     /inference="alignment:Splign:2.1.0"
     CDS             444..1157
                     /gene="Syndig1l"
                     /gene_synonym="Tmem90a"
                     /note="capucin; transmembrane protein 90A"
                     /codon_start=1
                     /product="synapse differentiation-inducing gene protein
                     1-like"
                     /protein_id="NP_001102955.1"
                     /db_xref="GeneID:685882"
                     /db_xref="RGD:1589004"
                     /translation="MESMSELQNPLLPRSPTHLHRPYPYPEAPPGWSCQEKLYSYLLG
                     GAGPAQAHQLLDPGSLQLAVEAWYRPSCLLGRDKVKEPKAGSCETSFTEAREPLVGPA
                     EQRSEPGQAEEDVTIHTVSYGVQEELQGQEDSQEEESDGTSTESECEDAFLTLPPRDH
                     LGLTLFSMLCCFWPLGIAAFYFSQGTSKAISKGDFRLASTTSRRALFLAILSIAVGAG
                     LYVAVVVALAAYMSQNGHG"
     exon            858..998
                     /gene="Syndig1l"
                     /gene_synonym="Tmem90a"
                     /inference="alignment:Splign:2.1.0"
     exon            999..1763
                     /gene="Syndig1l"
                     /gene_synonym="Tmem90a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagtcggcgc ggagccgcct cgggccgggc tgagagcgga gcgcggcaga gccagaatgc
       61 ggggctcccg ggaccgtgta gggcgcgcgg ggcggcggcg ggcgggcggg agctgtccgc
      121 ggtgctgaag cagcggtggc gacagcggca gagacgcggg ccgggagcag ggagctctcc
      181 tggaagctcc accgcggccg tgaggcgggg acggcgtcgc ttgccggccc atgcccggtc
      241 cccgagcccc gcgaggaggc gggacggtcc gcagagcgac agaacggcag ctgggaagtc
      301 agaaaggccc cgtgagtgaa gatgagttct gaggcccagg aataaagatt gcagcctctg
      361 gggctggaca gatggctcag tgggctccgt gaagactgtg tggaggacgg agactcccct
      421 ccctggcaac tgcctggcga accatggaga gcatgagtga actacagaac ccactgctgc
      481 caagaagccc cacccacctc cacagaccct atccctaccc ggaggctcca cccggctggt
      541 cctgccagga gaagctttat tcctacctct taggaggtgc tggtcccgcc caagcccacc
      601 agctcctaga cccaggatcc ctgcaactgg ccgtggaggc ttggtatcgg cccagctgcc
      661 tcctcgggag ggacaaggtc aaggagccca aagcaggcag ctgtgagacc agcttcaccg
      721 aagccaggga acccttagtg gggcctgcag agcagcgctc ggagcctggt caagctgagg
      781 aggatgtgac catccatact gtgtcctatg gggttcaaga ggagctgcag ggccaggagg
      841 acagccagga ggaggagagc gatggaacct cgactgagag tgagtgtgaa gatgccttcc
      901 tcaccctgcc tcccagggac cacttggggc tcacactctt ctccatgctc tgctgcttct
      961 ggcctctggg cattgctgcc ttctacttct cccaggggac cagcaaggcc atctccaaag
     1021 gggacttccg cctggccagc accacctccc gccgggctct cttcctggcc atactctcca
     1081 tcgctgtggg ggccggtctc tatgtggctg tggtggtagc tctggctgct tatatgtccc
     1141 agaatggcca tggctagtag tcagtgggac tgtcatcctg gctctcccgg cctaccagag
     1201 gaaggtgtga agcttggaac tgtgtatcct atggagagcc ttggccctga agagaacctg
     1261 ggacgatagc ttgttgagga gaggcctccc attctgcagc ccacacagtg caatctcgcc
     1321 ctctcgccca ctgcgtccag tcccagagca ggctggctgt gaatgggaag caggcccagc
     1381 aggcttgtcc aacaggccta gctcggtgta ctctgcccat tccctacagg acctctgccc
     1441 cacagagaga gagcaggagg ttcatgggag gaaaaagaat tcccaaggga caaaggccct
     1501 ggccagactt tgcagtcaag agggttctag cctgtgcata ttttgagcag ctgccccacc
     1561 cccacctccc accccctcaa ggcccaagac cctccaatca ggaaagaaaa acatggaccc
     1621 cagccatctc tcgctctttc tgactctggg tacagcatgt ctccctgtta ttgtggaaga
     1681 cgctctgcgc tctgcggtgt ctcccaggta gaggtagagc cagaaagctc tgtaatgagg
     1741 gcaggttgct agggcttttc tgt
//
