LOCUS       XM_039110356            4719 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus syncoilin, intermediate filament
            protein (Sync), transcript variant X1, mRNA.
ACCESSION   XM_039110356
VERSION     XM_039110356.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4719
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4719
                     /gene="Sync"
                     /note="syncoilin, intermediate filament protein; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 25 ESTs, 10 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 13 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:362606"
                     /db_xref="RGD:1307970"
     CDS             549..1970
                     /gene="Sync"
                     /codon_start=1
                     /product="syncoilin isoform X1"
                     /protein_id="XP_038966284.1"
                     /db_xref="GeneID:362606"
                     /db_xref="RGD:1307970"
                     /translation="MASQEPLRGGDGARAARDTHTEASFPLQDSESPKEAKTFNPEAT
                     LSLEGSVNLEDILYLGASGDFEESLYEEEFEKPEQTLYIDESRQPDEALDLEELVSPE
                     ETLSVEEPVRPEEVQFSEQPVAPAESPTACEGEMVTTTEESRPAQPIPGTEESLSVED
                     LELLEGRFQQCVQAVSQLEEERDRLIHELVLLREPALQEVQQVHQDILAAYKLHAQAE
                     LERDGLREEIRTVKQKLFKVTKECVAYQYQLKCHQQDVAQFADCREALTTRAAQLSGE
                     LTQLRDAYQKQKEQLQQQLEAPPTQSDGHFLQESRRLSTQFENLMAESRQGLEDEYEP
                     QLLRLLERKEAGTRALQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQITLVRQKH
                     DEEVLQYREQLEEMEERQRQLRSGVQVQQQKNKEMEQLRTSLAEELSTYKAMLPKSLD
                     QADAPTPQAGGVEAQSPDKVSLL"
ORIGIN      
        1 agacgcatgg ggtgtggcag ttaacacccc ccccttctcc agcagacgcc ttgccccacc
       61 ccgtcacgac agctgcgggc caccgagaag atggcctggc tccaagccct tgcgcgggtg
      121 gggatctcaa ggcgccaaca cgcggggtgc tgggtccctc tgggtacccc accagtgaac
      181 cttcctcccg cctcgattga acttgggagc tgctccccct gggactgaaa accccctctt
      241 ctcctcacca tgcaaccagg gccagaagga aaagtggaga gatggaggga acgttcgcga
      301 agtgccgctg ggccgccccc tcatcccacc ccacccccac ccctcccacc ctctccccgc
      361 ctccagggcc gcgggggccc gcgtcctcct cccgcgggcg atcgtccggc caagtgggcg
      421 cgtcccgccc gggccgcggg gatctggtgt ccgctgcagc tggcagtgcg gcgggcgccg
      481 gcaccggcac aatcgcagac ggcgttggct attaataacg ttccgggcga gcccggggtc
      541 gtgcagccat ggccagccag gaacccctgc gcggcgggga cggcgcccgg gccgcgaggg
      601 atacacacac agaggccagt tttcctcttc aggactcaga atcccccaag gaggccaaga
      661 cctttaaccc agaggccact ctgtctttgg aggggagtgt gaacctagag gacattctct
      721 atctgggggc atcgggggac tttgaagaga gtctttatga ggaagagttt gagaagccag
      781 agcagacact gtatattgac gaatcgaggc agccagacga ggccctggac ctggaagagc
      841 ttgtgagtcc agaggagacg ctgtctgtgg aggaacctgt gagaccagag gaggtacagt
      901 tctcggagca gcctgtggcg ccagctgaga gcccaactgc ttgcgaggga gaaatggtga
      961 ccaccacgga ggaaagccgt ccagctcaac cgattcccgg cacggaggag agcctcagtg
     1021 tggaggacct ggagctgcta gaaggccgtt tccagcagtg cgtacaggct gtatctcagc
     1081 tggaagagga gagggaccgg cttatccacg agctggtgct gctccgcgaa ccggccctgc
     1141 aggaggtaca gcaggtccac caggacatcc tggctgccta caagctgcac gcacaggccg
     1201 agctggagag ggacgggctc agggaggaga tccggacggt gaagcagaag ctgttcaagg
     1261 tgaccaagga atgcgtggct taccaatacc agctgaagtg ccaccagcag gacgtggctc
     1321 agtttgcaga ttgcagggaa gcgctgacca cccgggccgc ccagctctct ggagaactga
     1381 cccagctccg cgatgcctat cagaagcaga aggagcagtt gcagcaacag ctagaggcac
     1441 ccccgaccca gagcgatggg cactttctcc aggagagccg acggctgtcg acacagtttg
     1501 aaaatctcat ggcggaaagc cgtcagggcc tggaggacga atatgaaccc caactgcttc
     1561 ggctcctgga aaggaaagag gcggggacca gagctctgca ggacacccag gcggagatcc
     1621 aggagatgag ggaggctctg agacccctgg aagcagaggc ccggcagctc cagcttcaga
     1681 acaggaacct ggaggaccag atcacgctcg tgaggcaaaa acacgacgaa gaggttctac
     1741 agtacaggga gcagctggag gagatggaag agaggcagcg gcagttacgc agtggggtgc
     1801 aagttcagca gcagaagaac aaggagatgg agcagctgag gacaagcctt gctgaagagc
     1861 tttccacata taaggccatg ctacccaaga gtctggatca ggctgatgca cctactcctc
     1921 aggcaggtgg agtcgaggca caatccccag acaaggtttc tctgttgtag tcctggatgt
     1981 cctggaactc actttgtaga ccaggctggc cttgcacttg agacatccac ctgcctctgg
     2041 agggtggaga ttaaaggctt gagccaccac tgccccgtta agaactttta aattatagat
     2101 accatctact ggctggtcgg gatcagtgat tagaacactt gctgaggaca cagaagtggc
     2161 tctcaggacc cacatagcag ctcaagtctg taactccagt tctagacaat ctaatgcctt
     2221 taaacgtgat acacaggtac atgcaagcaa aacatccact cacacataaa gtatttaaat
     2281 ccaggttcta tatacactcc tcccaacact ggcactcaag cttccttggt acagatcaaa
     2341 aggcaacctt attgtcaagt tcagaatgac aagaggccaa caagagagtt aaattactaa
     2401 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa agggaagctg aggccggagt
     2461 atcatacatt caaaagccct tccagtaaaa ctgagatgtt gactcaaaaa agtaccaaaa
     2521 aaaaaaaaaa aaaaaagaga gagagagaga gaaagttaaa gggctgaggg aatatagctc
     2581 agtggtaggc tgtttgtttg gcttctatgg ggtcctagtt caattcctag tatcacaaag
     2641 ccaaataata tgcatacatg tacatagatg ggtcacctca gtaggtggga gagcatgtca
     2701 agcaagcatg tcttcaggaa gacaaacaac aaatagagcc aaagctgtac acaacccaga
     2761 tgtccacaca ctttatcgga tacgaactgg gactgtttag aaatgtatgg ttggctctgt
     2821 aacccagaaa caagaacgca tttatcaaag gatcagtagg gatggacttt cccaagataa
     2881 gagtagcaag cacctggcaa gcaatgtacc ctgtaaaagt acatacactg gcgggcttgc
     2941 ctggagaggt caggctggct ggaggcagac tcccagtcag ctcgtatctg gagtctgctg
     3001 taggctacag gtactgacgt cagtgcggct tatcttccgg cagaaccctg agtaatggat
     3061 agatcaccac accctgaagt atcatcaaga acattatgga ttgctttgtg ctgatccaaa
     3121 ccaagaacat ctacgggaaa acattggtgt caaagtcagc caatttttgc tacatggatc
     3181 cacaacaaaa tcttttgtgc tacaggtatt aagagtttta aatgactcca ctcacaaagc
     3241 gatgttcccc ttcaagtcta cactcacgta atttactctt tttttttttt tttttggttc
     3301 tttttttcgg agctggggac cgaacccagg gccttgcgct tcctaggtaa gcgctctacc
     3361 actgagctaa atccccagcc ccataattta ctcttaaaat agtgtcaaat taaaaccacc
     3421 acaagacccc acttatatat agtcctggat ggcctagaac tcactttgta gacaatgttg
     3481 gccctgaatt cagagctatg cctgcctcta cctctggagt gctgggacta aaggcacgac
     3541 aggcttgttt ttgagaccag gcctcaagta gtctaggctg gtttctaact tgttatgtag
     3601 gtcaggatga ccttgaactt ctgatcttgc ttctacctcc caactgctgg gactacaggt
     3661 gtgcaccatc aagcacgacc caagacacac cccaacctcc agagtcaccg tcaccatgga
     3721 ttgctgctct ggctgtcctg ggactcagag gagggactca aactcatgga aatctacctg
     3781 cctcacaaga gctaggatta agtgtgcacc accatgccca gcttgataat ttttactaca
     3841 tgctaatgta accagaactc ctaggaatga cttcagattt ggaccagaca ctttgttttt
     3901 caaactttcc caaagatcac aaatggttct ggaggtgaga ctcagctagt cagtccaagc
     3961 aaaagcagtt acttttccca gctatcacca cgtgccaata aaggcaccga ctatatttta
     4021 aaagtagggg ttccaatgaa aaacattcgt cagatattag ctctctgtaa aacagttcaa
     4081 gtgtctttca aatttaaact atgccttaag ttctctatca cactgcctcc gagattcttg
     4141 gaaaccatgg agctctctag agaaaacttc aagaatatgt cattttacca cggctgattt
     4201 gtgtactcta ttcagtaatg tcttcacaat ttccccaact ggagtaaagc tctcttttat
     4261 ctatggttgt aggtctgtta tgtttattct aatctcgata gtcaaaatca tggaaaacaa
     4321 ctgtcattcg aacaaattct tccagaagcc agagactgtt gtctgatgga tactaaataa
     4381 aacccaccag catggggcta tatagaaaag caatttattc cgttataagc acttacacag
     4441 ttagtcatgg agagttaata ggcctgatgg tgagacaggt tagccaaaat ggagatggcg
     4501 tcaaactata gtggtcaaag actaacccta caaaagcaac gtttatcaag gattaattta
     4561 atcttagaaa caaatacaaa ctagcaatcc actctttctc aacatgacag tgcaccagtg
     4621 gtacaactgc caggtaaaaa cgtacatctt tacaacttgg tggtcccaag tttaaaaaag
     4681 aaaaaaagat taaaaaaaaa aaaaaaaaaa agaaagaaa
//
