LOCUS       NM_001108683            2156 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus syncoilin, intermediate filament protein (Sync),
            mRNA.
ACCESSION   NM_001108683 XM_001060926 XM_342925
VERSION     NM_001108683.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2156)
  AUTHORS   Poon E, Howman EV, Newey SE and Davies KE.
  TITLE     Association of syncoilin and desmin: linking intermediate filament
            proteins to the dystrophin-associated protein complex
  JOURNAL   J Biol Chem 277 (5), 3433-3439 (2002)
   PUBMED   11694502
REFERENCE   2  (bases 1 to 2156)
  AUTHORS   Borges AC, Marques S and Belo JA.
  TITLE     The BMP antagonists cerberus-like and noggin do not interact during
            mouse forebrain development
  JOURNAL   Int J Dev Biol 45 (2), 441-444 (2001)
   PUBMED   11330864
REFERENCE   3  (bases 1 to 2156)
  AUTHORS   Newey SE, Howman EV, Ponting CP, Benson MA, Nawrotzki R, Loh NY,
            Davies KE and Blake DJ.
  TITLE     Syncoilin, a novel member of the intermediate filament superfamily
            that interacts with alpha-dystrobrevin in skeletal muscle
  JOURNAL   J Biol Chem 276 (9), 6645-6655 (2001)
   PUBMED   11053421
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473968.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001060926.1, XM_342925.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132291,
                              SAMD00132293 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2156
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..2156
                     /gene="Sync"
                     /note="syncoilin, intermediate filament protein"
                     /db_xref="GeneID:362606"
                     /db_xref="RGD:1307970"
     exon            1..173
                     /gene="Sync"
                     /inference="alignment:Splign:2.1.0"
     CDS             124..1536
                     /gene="Sync"
                     /codon_start=1
                     /product="syncoilin"
                     /protein_id="NP_001102153.1"
                     /db_xref="GeneID:362606"
                     /db_xref="RGD:1307970"
                     /translation="MASQEPLRGGDGARAARDTHTEASFPLQDSESPKEAKTFNPEAT
                     LSLEGSVNLEDILYLGASGDFEESLYEEEFEKPEQTLYIDESRQPDEALDLEELVSPE
                     ETLSVEEPVRPEEVQFSEQPVAPAESPTACEGEMVTTTEESRPAQPIPGTEESLSVED
                     LELLEGRFQQCVQAVSQLEEERDRLIHELVLLREPALQEVQQVHQDILAAYKLHAQAE
                     LERDGLREEIRTVKQKLFKVTKECVAYQYQLKCHQQDVAQFADCREALTTRAAQLSGE
                     LTQLRDAYQKQKEQLQQQLEAPPTQSDGHFLQESRRLSTQFENLMAESRQGLEDEYEP
                     QLLRLLERKEAGTRALQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQITLVRQKH
                     DEEVLQYREQLEEMEERQRQLRSGVQVQQQKNKEMEQLRTSLAEELSTYKAMLPKSLD
                     QADAPTPQAGGVEAQSPGTV"
     exon            174..1323
                     /gene="Sync"
                     /inference="alignment:Splign:2.1.0"
     exon            1324..1448
                     /gene="Sync"
                     /inference="alignment:Splign:2.1.0"
     exon            1449..1525
                     /gene="Sync"
                     /inference="alignment:Splign:2.1.0"
     exon            1526..2156
                     /gene="Sync"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcccgggcc gcggggatct ggtgtccgct gcagctggca gtgcggcggg cgccggcacc
       61 ggcacaatcg cagacggcgt tggctattaa taacgttccg ggcgagcccg gggtcgtgca
      121 gccatggcca gccaggaacc cctgcgcggc ggggacggcg cccgggccgc gagggataca
      181 cacacagagg ccagttttcc tcttcaggac tcagaatccc ccaaggaggc caagaccttt
      241 aacccagagg ccactctgtc tttggagggg agtgtgaacc tagaggacat tctctatctg
      301 ggggcatcgg gggactttga agagagtctt tatgaggaag agtttgagaa gccagagcag
      361 acactgtata ttgacgaatc gaggcagcca gacgaggccc tggacctgga agagcttgtg
      421 agtccagagg agacgctgtc tgtggaggaa cctgtgagac cagaggaggt acagttctcg
      481 gagcagcctg tggcgccagc tgagagccca actgcttgcg agggagaaat ggtgaccacc
      541 acggaggaaa gccgtccagc tcaaccgatt cccggcacgg aggagagcct cagtgtggag
      601 gacctggagc tgctagaagg ccgtttccag cagtgcgtac aggctgtatc tcagctggaa
      661 gaggagaggg accggcttat ccacgagctg gtgctgctcc gcgaaccggc cctgcaggag
      721 gtacagcagg tccaccagga catcctggct gcctacaagc tgcacgcaca ggccgagctg
      781 gagagggacg ggctcaggga ggagatccgg acggtgaagc agaagctgtt caaggtgacc
      841 aaggaatgcg tggcttacca ataccagctg aagtgccacc agcaggacgt ggctcagttt
      901 gcagattgca gggaagcgct gaccacccgg gccgcccagc tctctggaga actgacccag
      961 ctccgcgatg cctatcagaa gcagaaggag cagttgcagc aacagctaga ggcacccccg
     1021 acccagagcg atgggcactt tctccaggag agccgacggc tgtcgacaca gtttgaaaat
     1081 ctcatggcgg aaagccgtca gggcctggag gacgaatatg aaccccaact gcttcggctc
     1141 ctggaaagga aagaggcggg gaccagagct ctgcaggaca cccaggcgga gatccaggag
     1201 atgagggagg ctctgagacc cctggaagca gaggcccggc agctccagct tcagaacagg
     1261 aacctggagg accagatcac gctcgtgagg caaaaacacg acgaagaggt tctacagtac
     1321 agggagcagc tggaggagat ggaagagagg cagcggcagt tacgcagtgg ggtgcaagtt
     1381 cagcagcaga agaacaagga gatggagcag ctgaggacaa gccttgctga agagctttcc
     1441 acatataagg ccatgctacc caagagtctg gatcaggctg atgcacctac tcctcaggca
     1501 ggtggagtcg aggcacaatc cccagggact gtttagaaat gtatggttgg ctctgtaacc
     1561 cagaaacaag aacgcattta tcaaaggatc agtagggatg gactttccca agataagagt
     1621 agcaagcacc tggcaagcaa tgtaccctgt aaaagtacat acactggcgg gcttgcctgg
     1681 agaggtcagg ctggctggag gcagactccc agtcagctcg tatctggagt ctgctgtagg
     1741 ctacaggtac tgacgtcagt gcggcttatc ttccggcaga accctgagta atggatagat
     1801 caccacaccc tgaagtatca tcaagaacat tatggattgc tttgtgctga tccaaaccaa
     1861 gaacatctac gggaaaacat tggtgtcaaa gtcagccaat ttttgctaca tggatccaca
     1921 acaaaatctt ttgtgctaca ggtattaaga gttttaaatg actccactca caaagcgatg
     1981 ttccccttca agtctacact cacgtaattt actctttttt tttttttttt tggttctttt
     2041 tttcggagct ggggaccgaa cccagggcct tgcgcttcct aggtaagcgc tctaccactg
     2101 agctaaatcc ccagccccat aatttactct taaaatagtg tcaaattaaa accacc
//
