LOCUS       NM_001191876            2256 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus synapse defective Rho GTPase homolog 1 (Syde1),
            mRNA.
ACCESSION   NM_001191876 XM_343173
VERSION     NM_001191876.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2256)
  AUTHORS   Lo,H.F., Tsai,C.Y., Chen,C.P., Wang,L.J., Lee,Y.S., Chen,C.Y.,
            Liang,C.T., Cheong,M.L. and Chen,H.
  TITLE     Association of dysfunctional synapse defective 1 (SYDE1) with
            restricted fetal growth - SYDE1 regulates placental cell migration
            and invasion
  JOURNAL   J Pathol 241 (3), 324-336 (2017)
   PUBMED   27917469
REFERENCE   2  (bases 1 to 2256)
  AUTHORS   Wentzel,C., Sommer,J.E., Nair,R., Stiefvater,A., Sibarita,J.B. and
            Scheiffele,P.
  TITLE     mSYD1A, a mammalian synapse-defective-1 protein, regulates
            synaptogenic signaling and vesicle docking
  JOURNAL   Neuron 78 (6), 1012-1023 (2013)
   PUBMED   23791195
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jul 17, 2010 this sequence version replaced XM_343173.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.25875.1,
                                           SRR26643299.29911.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-88                JAXUCZ010000007.1  11683505-11683592
            89-430              JAXUCZ010000007.1  11685159-11685500
            431-1075            JAXUCZ010000007.1  11685664-11686308
            1076-1290           JAXUCZ010000007.1  11686487-11686701
            1291-1417           JAXUCZ010000007.1  11687488-11687614
            1418-1578           JAXUCZ010000007.1  11687824-11687984
            1579-1804           JAXUCZ010000007.1  11688631-11688856
            1805-2256           JAXUCZ010000007.1  11689040-11689491
FEATURES             Location/Qualifiers
     source          1..2256
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..2256
                     /gene="Syde1"
                     /gene_synonym="RGD1305857"
                     /note="synapse defective Rho GTPase homolog 1"
                     /db_xref="GeneID:362842"
                     /db_xref="RGD:1305857"
     CDS             1..2208
                     /gene="Syde1"
                     /gene_synonym="RGD1305857"
                     /note="protein syd-1 homolog 1; synapse defective 1, Rho
                     GTPase, homolog 1; synapse defective protein 1 homolog 1"
                     /codon_start=1
                     /product="rho GTPase-activating protein SYDE1"
                     /protein_id="NP_001178805.1"
                     /db_xref="GeneID:362842"
                     /db_xref="RGD:1305857"
                     /translation="MAEPLLRKTFSRLRGREKLPRKKSDAKDRGRPAQRSEPKPPEPE
                     PRVLEGSQAGAEVPLSPETPRSPARGAYLQSLEPSSRRWVLGGAKPPEEISLGPRTPS
                     SGEPAGEIWYNPIPEEDPRPPAPEPVGSQLASSEPEGPILQGAAPTSPPTKTSRTKSP
                     GPARRLSMKMKKLPELRRRLSLRSTRTSRERERTAPAGSVISRYHLDSSVATPGQASV
                     AGGTRSPRGGYLSDGDSPERPGGPPSPTAFRPYEVGPSARAPPAALWGRLSLHLYGLG
                     GLRPTPGATPRDLCCLLQVDGVARARTGPLRSGPDFLRLDHTFHLELEAARLLRALVL
                     AWDPGVRRHRPCAQGTVLLPTIFRGCQAQQLAVRLEPQGLLYAKLTLSEQQEAPATVE
                     PRVFGLPLQLLVEREQSPGQVPLIIRKCVGQIECRGLRVVGLYRLCGSAAVKKELRDA
                     FEQDSAAVCLSEDVYPDINVITGILKDYLRELPTPLITQPLYQVVLEAMAQGHPSRAS
                     LGPEGTRGLLSCLPDVERATLTLLLDHLRLVSSFHTHNRMTPQNLAVCFGPVLLPARQ
                     TPSRTRLRGSGPGVSSAVDFKRHIEVLHYLLQSWPDTRRPSETPDVAPYLRPKRQPPL
                     HLPLDGPEVVTRPRGRGGPESPPSNRYAGDWSVCGGDLLPRGRDFLSGPDYDHVTGSD
                     SEEDEDESGEPRGTTDFEDEFDAPFNPHLNLKDFDALILDLERELSKQINVCL"
     exon            1..88
                     /gene="Syde1"
                     /gene_synonym="RGD1305857"
                     /inference="alignment:Splign:2.1.0"
     exon            89..430
                     /gene="Syde1"
                     /gene_synonym="RGD1305857"
                     /inference="alignment:Splign:2.1.0"
     exon            431..1075
                     /gene="Syde1"
                     /gene_synonym="RGD1305857"
                     /inference="alignment:Splign:2.1.0"
     exon            1076..1290
                     /gene="Syde1"
                     /gene_synonym="RGD1305857"
                     /inference="alignment:Splign:2.1.0"
     exon            1291..1417
                     /gene="Syde1"
                     /gene_synonym="RGD1305857"
                     /inference="alignment:Splign:2.1.0"
     exon            1418..1578
                     /gene="Syde1"
                     /gene_synonym="RGD1305857"
                     /inference="alignment:Splign:2.1.0"
     exon            1579..1804
                     /gene="Syde1"
                     /gene_synonym="RGD1305857"
                     /inference="alignment:Splign:2.1.0"
     exon            1805..2256
                     /gene="Syde1"
                     /gene_synonym="RGD1305857"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggccgagc cgctgctcag gaagaccttc tcccgcttgc ggggtcggga gaaacttccc
       61 cggaaaaagt cagatgccaa ggaccgcggc cgcccagccc agcgctcaga gcccaaaccc
      121 ccagaaccag aacctcgcgt ccttgaaggg tctcaggctg gagcagaggt accactcagc
      181 cccgagacac ctcggagccc cgctcgcggt gcctacctgc aaagcctgga gcccagtagc
      241 cgccgatggg tgctaggagg ggctaaacca ccggaggaga tatctttagg gcctaggaca
      301 cctagcagtg gggagcctgc tggtgagatt tggtacaacc ccatccctga agaagacccc
      361 agacctccag cacctgagcc cgtgggatcg cagctagctt cctctgagcc agaaggcccg
      421 atcctccaag gtgcagcccc taccagcccc cctaccaaaa cctcccgtac caagtcccca
      481 ggccctgcaa ggcgcctctc tatgaagatg aaaaagcttc cagagctgcg ccgccgcctg
      541 agcctaagaa gtactcgcac tagcagggaa cgagagagga ccgccccagc aggctctgtc
      601 atcagccgct accacctgga cagcagtgtg gcgactcctg ggcaggcatc agtggctgga
      661 gggactagga gcccaagggg tgggtacctc agcgatggtg attcgccgga gcgtcctggg
      721 ggaccaccat cacccactgc cttccggccc tatgaagtgg gcccatcagc ccgggctcct
      781 ccagccgcgc tctgggggcg tctcagcctg cacctgtatg ggctaggggg tctgcggcca
      841 actccggggg ctactcctcg tgatctctgc tgtcttctcc aagtggatgg agtagctcgg
      901 gcccgcacag ggccacttcg aagcgggcca gacttcctga ggctggatca caccttccac
      961 ttggagctgg aggccgctcg gctgctgcgg gccttggtac ttgcgtggga ccctggtgtg
     1021 aggcggcacc ggccctgtgc ccagggcact gtgctactgc caaccatctt tcgagggtgc
     1081 caagcgcaac aactggccgt tcgactggaa ccccagggac ttctgtatgc caagctaacg
     1141 ttgtcggaac agcaagaagc ccctgccaca gtggagcccc gtgttttcgg gctcccgctg
     1201 cagcttctgg tagaacgtga gcagtctcca ggccaggtgc ctctcatcat ccgaaagtgt
     1261 gtggggcaga tcgagtgccg agggctgcgg gtcgtggggc tgtaccgtct ctgtggctca
     1321 gccgcggtga agaaagagct tcgagatgcc tttgagcagg acagtgcagc tgtgtgcctc
     1381 tctgaagatg tgtaccccga tatcaatgtc atcacaggca tcctcaagga ttaccttcga
     1441 gagctgccaa cgccgctcat cacccagccc ctctaccagg tggtgctgga ggccatggcc
     1501 caaggacacc caagcagggc ttccctgggt cctgaaggca ccagaggact cctcagctgc
     1561 ctgccagatg tggagagggc cacactgacg cttcttctgg accatctgcg ccttgtctcc
     1621 tccttccaca cccacaaccg catgaccccg cagaacttgg cggtgtgctt cggaccggtg
     1681 ctgctgccag cgagacaaac accctctcgg acccggctcc gtggctccgg cccaggagtc
     1741 agcagcgctg tggatttcaa gcgccacatt gaagtcctgc attacttgtt acagtcttgg
     1801 ccagataccc gccggccctc agagacccca gacgtcgcac cgtatttgcg gcccaaacga
     1861 cagccaccgc tgcacttgcc gctggatggc ccagaagtgg tgactcggcc tcggggccgt
     1921 ggaggccccg aaagtccccc aagcaaccgc tatgcaggcg actggagcgt gtgcggggga
     1981 gatttactgc cgcgtgggcg ggacttcctg tccggacctg actatgacca cgtgacaggc
     2041 agcgacagtg aggaagatga ggatgagagt ggagagccga ggggcactac ggacttcgaa
     2101 gatgagtttg atgcaccctt caacccacac ctgaatctca aagactttga tgccctcatc
     2161 ctggatctgg agagagaact ttccaagcag atcaatgtgt gcctctgagc cctcaaagca
     2221 ggggatggat tttcgttact agggaattgc ttcctg
//
