LOCUS       NM_001389242             585 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus syncollin (Sycn), mRNA.
ACCESSION   NM_001389242
VERSION     NM_001389242.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Edwardson,J.M., An,S. and Jahn,R.
  TITLE     The secretory granule protein syncollin binds to syntaxin in a
            Ca2(+)-sensitive manner
  JOURNAL   Cell 90 (2), 325-333 (1997)
   PUBMED   9244306
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AA926002.1, AF012887.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-424               JAXUCZ010000001.1  92959621-92960044
            425-585             JAXUCZ010000001.1  92960914-92961074
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..585
                     /gene="Sycn"
                     /gene_synonym="Syl"
                     /note="syncollin"
                     /db_xref="GeneID:245917"
                     /db_xref="RGD:620862"
     exon            1..424
                     /gene="Sycn"
                     /gene_synonym="Syl"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..434
                     /gene="Sycn"
                     /gene_synonym="Syl"
                     /note="proximal small intestine-specific protein 9"
                     /codon_start=1
                     /product="syncollin precursor"
                     /protein_id="NP_001376171.1"
                     /db_xref="GeneID:245917"
                     /db_xref="RGD:620862"
                     /translation="MSPLCLLLLALALVAVPGARGACPVPADLKKSDGTRTCARLYEN
                     SDPYYDNCCQGPELSVDPGTDLPYLPSDWSNSASSLVVAQRCELTVWSLPGKRGKTRK
                     FSTGSYPRLEEYRKGIFGTWAKSISGLYCKCY"
     exon            425..585
                     /gene="Sycn"
                     /gene_synonym="Syl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcagatctc tccgttgtcc attgtcacca tgtccccgct gtgcctgctg ttgctggctt
       61 tagccctggt ggctgtcccc ggtgcccgag gcgcttgtcc agtgcccgca gacctgaaga
      121 agtcagatgg gacgcgcacg tgcgccaggc tctatgagaa cagtgacccc tactatgaca
      181 actgctgcca ggggcctgaa ctgtctgtgg atccaggcac cgacctgccc tacctgccct
      241 cggactggtc taactcggca tcttctctgg tagtggccca gcgctgcgag ctcaccgtgt
      301 ggtctctccc tggtaaacgt ggcaagacac gcaagttctc tacgggtagc taccctcgac
      361 tggaagagta ccgcaaaggc atctttggaa cctgggccaa gtccatctct ggcctctact
      421 gcaagtgcta ttgatgcctt gagggtctgt cgtctctgat tctgcacagt gctgagcctt
      481 acccagtctg tccttgggga ttgctctgac cccaagagcc aggaggcaag atggccccat
      541 tacctgctat cagagcttcc ctataataca gccctggtga agtta
//
