LOCUS       XM_039080182           11244 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus syntabulin (Sybu), transcript variant
            X12, mRNA.
ACCESSION   XM_039080182
VERSION     XM_039080182.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080182.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11244
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..11244
                     /gene="Sybu"
                     /note="syntabulin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 18 ESTs, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 32 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:500865"
                     /db_xref="RGD:1564335"
     CDS             9182..10549
                     /gene="Sybu"
                     /codon_start=1
                     /product="syntabulin isoform X8"
                     /protein_id="XP_038936110.1"
                     /db_xref="GeneID:500865"
                     /db_xref="RGD:1564335"
                     /translation="MLCRNPLSPSNIHPSYAPSSPSSSNSGSYKGSDCSPVMRRSGRY
                     MSCGENHGVKPPNPEQYLTPLQQKEVTVRHLRTKLKESERRLHERESEIMELKSQLAR
                     MREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLADKDKGIQKYFVDINIQN
                     KKLESLLQSMEMAHNSSLRDELCLDFSFDSPEKSLPLSSTYDKMADGLSLEEQITEEG
                     ADSELLVGDSMAEGTDLLDEIVTATTTESGDLEFVHSTPGPQALKPLPLVSQEEGIVV
                     VEQAVQTDVVPFSPAISELLQSVLKLQDSCPTSSASPDESGADSMESFSESISALMVD
                     LTPRSPNSAILLSPVEIPFSKAATEARANRLMRELDFAACTEERLDSILSLSQGGVVR
                     QYWSSSFLVDLLAVAAPVVPTVLWVFSTQRGGTDPVYNIGALLRGCCVVALHSLRRTA
                     FHMKT"
ORIGIN      
        1 tgccccaaac cctctcatct atgtctcttt gctccttttc aaattaatgc cctttttttt
       61 cattaattgt tgttctatac atatgtttgt ctatatacat atatctaagc atatctgctt
      121 agctgtataa tattatatgt gtatatgttt tcagcgatga ccgtttggta ttagataatg
      181 agttggtgtg ttcttccttc aaggagatat agtgcagtca gtgagatttc cactaaaacc
      241 tgcctatcaa atcagaaatg atggtaccca ggacccagac agctttttaa gggatgtagc
      301 aggtagaata aaatatttaa tgcaatagtt gctggtaatt aagtacagtg tgtaaccatc
      361 atagacaggt ggtttttttt tttgtatgtt tgtttgtgtt ttagaatctg gtttattaag
      421 gtgtgtgaat cctgattaaa tgacccttga ccaaaggcat cactagaaac agaccttctg
      481 agttcattgt tcataggcac gaacactacc taagaaatct tttgttgatc tttttacttg
      541 cattttctca gtcatgtatg tacagtttca aacattgtca ttgtgaaagt cccctctgct
      601 tttgaatgga gtccaattct gtaaattcct tggatgagaa aaattgccta cattgtctct
      661 gaactttggg ctgagtaagc ctgtccgcct cataaatata gagagaggaa atccaggaag
      721 caaggccctt ggatgactct tacagtcaac acgatgcaga ggcttaggtt gttaaagctc
      781 aggaaggtcc tgctctcagg ttaaaataaa gccatttgtt acccacagcc ccaccagacc
      841 cttagccaaa gctgacttag cttcagctct agatgtgtgt cctacttttt taaaaaggca
      901 actcattaaa accagtacca gtttactaaa atagcaagca attagtggct atcactttgg
      961 gggtcaggga ctctaagatt aagtaaccaa agcccatcta atttttggtc cattgctcta
     1021 gatttgggaa tgctgctgtc cctacctcag aaagcagtcc ctgaaatgcc tctgatgcca
     1081 gtgacataca caacatataa tggccactgg gatcgtgatg taatccgagc agagaaacct
     1141 gtcagggaat gcagggaggg cttagaaagg tgaagaacaa gcaagggagc ctgctctttg
     1201 ccaacagagc cctgaggtgc cctcagcagg aaaacccgtc ctgccatgct gagactccta
     1261 ctggaaactt ctgagaggcc atctgtcatt ttgacttctg tggtttacta actatgcaga
     1321 tttaattaaa agttgcatca aagagtgaag caaagcatcc ctacagcacc agtggatgat
     1381 gaatctgctt cccagtttgt cttttattcc cattctgcaa aacactggag gatgcatctg
     1441 tgtttgtcat gagctaagtg tccagctgag acatcagtgg gaaatgtact gagttccttg
     1501 tacaatgagt tcagtgggag gggatcgtga aggtgatgat cacgtgtgac cccattttga
     1561 gggagtttgt aattcaaggc agaatacagt atgataaatc tgatagcacc gatcagaagg
     1621 aaaggaatgg atgccttctt ccctggtggc tttctgaaga gtcaggtggt tacacccacc
     1681 accaccactt gcccacccac acatacacta tacctgttgt agtgttatgt caggatttta
     1741 aactgtttta cccagaagtg agagccctaa ctgttttgct gcaagtccat taaaagattt
     1801 attccagagc cacttgtagt tactgattta tttcttggag agtatcttaa ccccaggaaa
     1861 aaaagaatcc actgtcacta gtttacaaat tgaagtatta aaatctttat ccacagattg
     1921 gttagaaaga aaggcgggga gcaggcaaaa ttacacaaac aaataagaat aataagagga
     1981 aaaaccacta gaggccattg aggggataag agtgctcagg gccaagaaat ctacccggaa
     2041 gctgaaatgc tgaaatctgc atttgaaaga taccgctgta tctccttagc ctaggcatca
     2101 ggtatcagca gttactgaaa ttagaaacct gtgtggctga actgtaataa cctcaaaaca
     2161 atgacccagt atttgttact tctagaagga aaaaaataaa gatgtcccat atccaagagg
     2221 catttgctag aaaacccaga aggtatcaac taggttaacg attagaggcc tttactcagt
     2281 gaagcccaga tgtgttgctg gtcgttgcgg gattagttca gtgaagtgaa ataactactt
     2341 agctacttgc ttgaatccat tcttacaacc tctgctgcca gagcaccaac cagcccaggc
     2401 ctgaaagtta acatacaagg tatggttcca ggtgtggctc caggtgtgac tccaggtgta
     2461 gctccactgc aggtgtagct ccaggtgccg ctccaggtgc agctcttctc gttgcctctt
     2521 tggaattgga attccttttc agtatgtagg tgggtcttga actcacagca atccttttgt
     2581 cttagcctcc caaatgctga aattctaagc attagccacc actttgggtt tataactgct
     2641 ttctagtttt gttgtgtttg tctgtttgct gttttgaaaa taggatgatt atatagcttt
     2701 ccatccccca actcctgtca gatcttctcc accccctctt gcattcaaat tcacactctc
     2761 cctttctctc tctcattaga aaacaaacag ggatctaaaa cacaatgata taataaaata
     2821 ataaataaaa acaaacaaac cagaatagta taaaatgaac aagcaaaaca gaagaaaacc
     2881 agttaaagaa agtgcatgag aaacacatat agatacagag gcacgcacat cagcacacac
     2941 agaaatccca taaaaaaccc aaagccaact ggaaactgaa atatatacac aaaagaccct
     3001 ccaaaaatgc cattgagttt attttgtgtt ggccatgtcc tgctgggcat ggagcctgct
     3061 attaagagta gtttgtatcc ccagtgactt ttgtagaaaa ctattttttt tcctttgtga
     3121 tagttatcaa ttgtagataa tttctgggtt aggaattggg gcatgtatct agttcccctc
     3181 tcagtgctga gacctcatct ggcttagacc tgtgcaagct catgctgtca cagtctctgt
     3241 acgtttatat gtatgtgggg acctatcatc tttaaaagta tttgtttctg tggtatcttc
     3301 tatcccttca gggtctgaga agagtggggt ttgatgaaaa tatttagtgt gacagctctg
     3361 aagggaagaa aacattccat ttaggactga gtattacaac gtctctcact ctctgaactt
     3421 cgttctattg caggtttctg aatttgttcc atttattata ggcgggaact tttctgatga
     3481 tggctaagaa aattaactat gaatatagca gaaggttatt aggaattatt ttactgccac
     3541 attcttttag ccgaacagaa gtatctggtt tttccctaag caatgttgat tccatctcat
     3601 ggagtgggcc ttcagtccaa ccagacattg gttggctgct cccacagcat tgtgccacca
     3661 ttgcaccagc ataccttgca gacagggttt gtagctgggc tgctgtttgc ctttctcctt
     3721 cgatggtcta cagaatgcct tccagcacca caaacactag tcagtctggg tgaaggctct
     3781 acataaacac tagctccact ctccattctt tgtgttcttt gactcagagt taatttcctc
     3841 acatcttgtc agcctaagca aaagactgca gcagcaaagt atagcctcaa gcatagactg
     3901 gaatctcttt ctggcattaa aatagataag gggaaatata tgaaattaaa tgtactttgg
     3961 gaattgtata gcattctgat atatggctga ttaccagtaa taccaataga aagaaaaact
     4021 gagagtttta ctgaatgctc actgtccttg gcaaaattcc aagatcttag ctcaattaat
     4081 tttaacatca gtacttgctt ggtttatact gccaacttaa caaacatgac ctaaagtcac
     4141 ctgggaagag ggaaccttct tcccagaata agagttacct aaatcagatt ggcctgtgac
     4201 aatgtctgtg agagttcatc tttattcatg acttagccca ctgtgggcag tgatatccat
     4261 aggctggtgg gactgggata cctgagaaag ccagctctac ctgagccagt aagcagcagc
     4321 ctccatggct tctgctctag gttcctgacc tgacttccct gaatgctaga ctgttaccta
     4381 ggattaaaag cacagcacac ctttctttcc ctaagttgca ttttggacaa atatcttatc
     4441 acagcgaatg aatgaagctg gaaccttaga caagagctct gcctaatttc ttaggttctt
     4501 agaagatgat cattactttg tccaagagag catttgaagt tattatagaa tgggagtctg
     4561 aagttctcat gctgagagaa aatgttcaca cagaacacag cagataatgc cttgtggtag
     4621 acaatttcat accatcccag caggaccaaa acggttgcat caaacatgga tgtaatgagc
     4681 acacttaagt gtttatcgct gtggctggtt tacatattta ctctcctgtt ttcctcccat
     4741 ctgtgccttt gatgacctac tcaatcaaaa taatggtgcc aaatggatcc taatgggctt
     4801 cccctaagaa ttagtgaatc gtaatcctcc tctagaagac aactgctgtc caaatccatc
     4861 tcctaggatt tattgcacgg ccaatgttca cggccactga gttggggatc tgccagatac
     4921 tcactactta ctctaatgca ctgaggaagc catgcaggtc tctcatactt ggaagctaca
     4981 gccgactaca cccaccattg agcttgttca ttagtcctca gtgtgacaga cataaacctg
     5041 gaaacatctt tcttatgcat acttgtaaac caagagctat aaatcatgca tatgtgtgtt
     5101 ttaggttggg ttttttattt gctccatacc ggagaaacat ttattgaaga gcatctgcaa
     5161 aagaattgga atacttgaag agttccataa atacctgctt ggtaaaaata tatggttata
     5221 atagcttcaa gccagcccca catcctgtgg taacaaagtg gaggactatg ttatcagtca
     5281 gggttctcta aaggaaccag atacaatgga cagatacaat gaactaatct acatatgtgt
     5341 atgtatgtgt gtattcacat atatgtatat ttatatatat gcgttatata tacatataca
     5401 ttagagtggc ttacaggctg tcatctgagt agtcctacag tagctgtctc ctgatgaaaa
     5461 agccaacaat ctggtagttg ttctgtctac aagattagag gtctcagtag tcctagtcta
     5521 atgctgggat cccaaggaat tgctagagag cggccagttt tccctctgtg taggaatctt
     5581 caagaagaag taggttttaa cacaagtaaa ggaatggctc aggattgatg aacttgtcag
     5641 tgagagtgag gccaagcagg caggaggcaa aggcttcctc ctgctgctct ggtgacccgg
     5701 aatgagtatg gatctgacca ataatgatcc aggtttagga taggtgttcc aacaaataaa
     5761 gctctcacag ttgtacctag ctgcttgggt ttcagttaat tccagacata gtaaaacttg
     5821 acagctaaga ctagccatcg caggtcacat tatccaaaaa tccagaaaga gggaagttgg
     5881 aggctccttg tgaaggtatt gtggacttgg aaagaggtac cagcaacctg agtttattgt
     5941 ttgcttcaca aggaatattg tagtatagca tttggttgtg cttgtacagt ggtttacaga
     6001 aatctttgta ttaacaacag tctgttacct tttgttacct gaatcaggta ataaaattct
     6061 tctaccacag gacctcgacc agggcatcac taataggcaa cagcaaatat ggtaccaacc
     6121 aggggttagc ttcagaaaca tggctataat atgcttggca gaatacttga agcatttcat
     6181 aaaggtgatt accctacatg agagtttaaa ggaggtagac ccctcagttt atcattaaga
     6241 agaggtttct gctagaccta ggtttgcctc ctggctatac attcactagc ttatcagttc
     6301 acttgatatc tatctgtgaa ctattttcaa agtactgaca gcattctcat taagtgaata
     6361 gaaaagagga gagaatgatg tggcgtctgc tatcatgtca cccagtttaa atgtgaggac
     6421 gtagctaaaa caaaggggca tactgagata agtttaagct gtgagagaat aaagcaagct
     6481 agtaggttag tcagcaggaa aggcaggagg tgacctgaga tgaagaactg cagctgtcct
     6541 ttctggcttg agacttgcat gggtgacgga cagggtggtg agtgaggaag ggaacaagta
     6601 tggtagctga agtctgtatt gtcagggtga tgggcggcca tgtcagagct caggagagga
     6661 gacgtggttc gatttattta cttgagattt ctcgtgtatc ttgtggagct tgaattacct
     6721 tggagtgcaa ctgaagagga tataaaattc agatggctaa gtgcaggatg gagatagagg
     6781 aagcagacaa gtacagcata ggtgatttaa cacaaggcag ctaagccacc tccacaggta
     6841 tctcctcctt gagtagccac agcgcctgcc gtgtaccagg cagaggcaag gggcaaaagg
     6901 agcatgggag gcacctggtt accttaagga tggactaaag agggaccaca tgacacttct
     6961 aattataact gtggacaact tagtcacatg gacacctgtc atcatacaag ggactgtaga
     7021 tatggacatt agttaatagc ctacaaggtg tcactatggt cctgaatagc agaaggatag
     7081 ctggctttcc tcttatccgg taggtatctg agaatttcct tcactaccaa gagcttttca
     7141 gtgcccaaga tcacatagca aggggtgtgg ggtttcatga tctccacaac caatcacttg
     7201 tgcattgctt acaagtgatc cttaatatgt gcaggatatc attccttagg aataattagg
     7261 agatgagttt cttgcctaag catgagctga acaagggaag caatagcatg caaaacaaga
     7321 agtatatata ggtaactaag aaatgctgga gagagagaga gacagagaga gagaacgaac
     7381 acaagaacac gagaacatga aaacaagaac cttccccagg gaagtgcaca ccaactggtc
     7441 atccaaaacc aaatcatcat ctccgaaaac atacaaagaa ataatattat acagctcaaa
     7501 caggctatat ttagaaatat gtgtgaatac acacatacac acacacacac acacacacac
     7561 acacacacac caccaccacc agcagcaatt taatagaaaa gaggccatgg atttgaagaa
     7621 caaaaaagga tatatgggag gatctggaaa aagggaagga aaagagaaat gttgtgataa
     7681 cattataacc tcaataacaa aacaaaaaag atgggtttta aaatattgaa catcgaagac
     7741 tctaatttta tttcaagaaa tcctatcaga tgagctctga gaatggccaa agccagcaca
     7801 gacataggct atttcagact gacatgtggt ttttcaaatg gcacttcctg ttcaaagaag
     7861 gtaattatga gaactctaca ataagaggct tggggaaggc tcagtacaca aagattcctg
     7921 cttctctgag aggtaattgt ggaaggggga actctactta tatttagata ttgaagggtg
     7981 atctaggtca cccttgagca ggtcatggag ggctagcaaa agggaggcta taatgactag
     8041 aaatattctg tctttttccc agttacaata aagaatactt agcttttcct tggtactttg
     8101 gggttcagaa atgatatgag gcatgtagca gagcaaatgc aggcctgaac cccacatgac
     8161 gctggcagac aaatagacac agcctccatc tttgcaattg tcaatgtcag catcagacag
     8221 aatgctgtgt gacaggggaa accctttgcc taacaaacgg tactcactct cattgcaatc
     8281 taaaaaacgg gagaagttta caaattgcag acttcaaggt atttgaacac tcccactggg
     8341 tttctgttat ctgtagtgtc ccggaaagaa ttgtcctgat ctcagggagg actgtaatgg
     8401 aggtgtctat ttctagaaag ctcctgtttg gaaagtattc ctacagttgt cccagagagc
     8461 tctggattct attttctcct tctcagaaca acagagctcc cctgctctcc tctgcctggc
     8521 agcatggtga agtgccctgc atacttaaat agctgtaatt catgaagtgc ccaagccttt
     8581 ccctcaaaat gtctcatgct tgccattgga tttagggcac tgtaggtgtt tggtgtcact
     8641 tctggcttat tcactagggc actataatca aaatgtggaa tacggctgca tgcttcgtac
     8701 tactgttgcc aaaggattag ctatgactgt tgtacaagcg tttgcctcca tttaacaatg
     8761 tggtatttct gcaaatgctt tgtgtccatt cacaagggcg atgctttcat ttgaaaagct
     8821 gcagtcgcca gggaaaaggc tcagtgctct tccctgatag gccagctctc cctctgcctc
     8881 ctgttgctat ggtgcccagc agagtaactt ccttgcccta cacatgtagg aggctccgtc
     8941 tccatggata ccccactcgg agattgtact ctactgagag atgagctgca cacactgact
     9001 atatttctgc aaaagacata cccccagcct gtggcagaag gctgctttca gagacagtgt
     9061 ctgccatgaa agtctatgga gcttactttc ttacagaggt cctcatgggc ggagcaatgg
     9121 agcaccatcc cacaagtctg gcagcagccc accgtcccca agggaaaaag accttgtgtc
     9181 tatgctgtgc agaaatccac tgagccccag taacatccat cctagctacg ccccttcttc
     9241 tccaagtagc agcaactccg gctcctacaa aggaagcgat tgtagtccag tcatgaggag
     9301 gtctggacga tatatgtctt gtggagaaaa tcatggcgtc aaacccccaa atccagaaca
     9361 gtatttgaca cctctgcagc agaaggaggt cacagtgagg catttgagga ccaagctgaa
     9421 ggagtctgag cgccgactcc atgagaggga atctgaaatc atggagctca agtctcagct
     9481 ggctcggatg agggaagact ggatagagga agagtgccac agggtggagg ctcagttggc
     9541 gctcaaagaa gccagaaaag agattaagca gctcaaacag gtcattgaga ctatgaggag
     9601 cagcttggct gataaagata aaggcattca gaagtacttt gtggacataa acatccaaaa
     9661 caagaaactg gagtctctgc ttcaaagcat ggagatggcg cacaatagtt ccctgaggga
     9721 tgaactgtgt ctagacttct ccttcgattc cccagagaaa agcttacccc taagcagcac
     9781 atatgacaag atggcggacg ggttgtctct ggaagaacag ataacagagg aaggtgctga
     9841 cagtgagctt ctggtgggag acagcatggc cgagggcaca gatctgttag atgagatagt
     9901 gactgccacc accacagaat ccggtgacct ggagtttgtt cattccactc cagggccaca
     9961 agccctcaag cctctcccct tggtgagcca ggaagagggc attgtggtgg tggagcaagc
    10021 agtgcagacc gatgtggtgc cgttcagccc tgccatctca gagctccttc agagtgtgct
    10081 aaagttgcag gactcctgtc ccacaagctc agcatcccca gatgaatccg gagctgactc
    10141 aatggaaagc ttctcagaat ccatctctgc cttaatggtt gatttaactc caagaagtcc
    10201 caactcagcc atccttctgt ctcctgtgga gattccattc agcaaggcag ctacggaagc
    10261 ccgtgcaaac cgcctcatga gagagctaga ttttgcagcc tgcacagaag aaaggttgga
    10321 cagcatcctc tcgctgtctc agggaggtgt cgtgaggcag tactggagca gcagtttctt
    10381 ggtggatcta ctggctgtgg ctgcccctgt ggtacccact gttttgtggg tattcagtac
    10441 tcagagaggg ggtacagatc ctgtctacaa cattggagcc ctgctccggg gctgctgtgt
    10501 ggtggctcta cactccctac gccgcacagc tttccacatg aaaacctaat tagtcgttac
    10561 catgtgccaa tgtatctgtg tagcgtggtg ccaggtagag caacctcagg tggatcagtg
    10621 gaagtctcta ttgtcatttt tgctccttgc tatttgattt gcactatagt cagttgcagc
    10681 ctgttcactg tttaaaccag aggtatcttc caaggcatgg aaacctggtt ctggtagatg
    10741 tcccaccaga gtggcgtaga aagcatgctt gtgcccctgc cgtgttgtct gaggtgcccg
    10801 ttcttatact aatggttcag aaagagaaaa tgcagtttgc actttcacca cagcctctct
    10861 aaggctgggc atgttatctc cttgctttgc tttgtgctgt tttaaaatgt gtaattgttc
    10921 cagcattcca atggtcttgt gcatagcagg ggactgtaac caaaaataaa aatgtatttg
    10981 tgtaattagt tcaaagaaga ctcgaatagc tctttattgt ctttcttggg gttgataaag
    11041 tttgagtgtt tggatttttt tttaaatgta gctccaaagt cttaaaaggc tcatttgctc
    11101 ttaaacctgt cagttgatga tactatgtaa atttacaatg tactaactta ttttttgctt
    11161 attatatata gtggttcttt ttttggaaat tatttgtacc cacacacttc agcatgaaaa
    11221 taaagattag tgtttccatt taaa
//
