LOCUS       XM_039080181            2285 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus syntabulin (Sybu), transcript variant
            X11, mRNA.
ACCESSION   XM_039080181
VERSION     XM_039080181.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080181.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2285
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2285
                     /gene="Sybu"
                     /note="syntabulin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 15 ESTs, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 73 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:500865"
                     /db_xref="RGD:1564335"
     CDS             223..1590
                     /gene="Sybu"
                     /codon_start=1
                     /product="syntabulin isoform X8"
                     /protein_id="XP_038936109.1"
                     /db_xref="GeneID:500865"
                     /db_xref="RGD:1564335"
                     /translation="MLCRNPLSPSNIHPSYAPSSPSSSNSGSYKGSDCSPVMRRSGRY
                     MSCGENHGVKPPNPEQYLTPLQQKEVTVRHLRTKLKESERRLHERESEIMELKSQLAR
                     MREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLADKDKGIQKYFVDINIQN
                     KKLESLLQSMEMAHNSSLRDELCLDFSFDSPEKSLPLSSTYDKMADGLSLEEQITEEG
                     ADSELLVGDSMAEGTDLLDEIVTATTTESGDLEFVHSTPGPQALKPLPLVSQEEGIVV
                     VEQAVQTDVVPFSPAISELLQSVLKLQDSCPTSSASPDESGADSMESFSESISALMVD
                     LTPRSPNSAILLSPVEIPFSKAATEARANRLMRELDFAACTEERLDSILSLSQGGVVR
                     QYWSSSFLVDLLAVAAPVVPTVLWVFSTQRGGTDPVYNIGALLRGCCVVALHSLRRTA
                     FHMKT"
ORIGIN      
        1 cagtcccatt ggcttttgcc ctggaagtga tgaagatttt accaggaaga aatgcaggat
       61 tgggatggtt ggtgagggaa atatccaatc agctcgttat aaaaaagaat ccaagggagg
      121 catcataaag ccagcagagg tcctcatggg cggagcaatg gagcaccatc ccacaagtct
      181 ggcagcagcc caccgtcccc aagggaaaaa gaccttgtgt ctatgctgtg cagaaatcca
      241 ctgagcccca gtaacatcca tcctagctac gccccttctt ctccaagtag cagcaactcc
      301 ggctcctaca aaggaagcga ttgtagtcca gtcatgagga ggtctggacg atatatgtct
      361 tgtggagaaa atcatggcgt caaaccccca aatccagaac agtatttgac acctctgcag
      421 cagaaggagg tcacagtgag gcatttgagg accaagctga aggagtctga gcgccgactc
      481 catgagaggg aatctgaaat catggagctc aagtctcagc tggctcggat gagggaagac
      541 tggatagagg aagagtgcca cagggtggag gctcagttgg cgctcaaaga agccagaaaa
      601 gagattaagc agctcaaaca ggtcattgag actatgagga gcagcttggc tgataaagat
      661 aaaggcattc agaagtactt tgtggacata aacatccaaa acaagaaact ggagtctctg
      721 cttcaaagca tggagatggc gcacaatagt tccctgaggg atgaactgtg tctagacttc
      781 tccttcgatt ccccagagaa aagcttaccc ctaagcagca catatgacaa gatggcggac
      841 gggttgtctc tggaagaaca gataacagag gaaggtgctg acagtgagct tctggtggga
      901 gacagcatgg ccgagggcac agatctgtta gatgagatag tgactgccac caccacagaa
      961 tccggtgacc tggagtttgt tcattccact ccagggccac aagccctcaa gcctctcccc
     1021 ttggtgagcc aggaagaggg cattgtggtg gtggagcaag cagtgcagac cgatgtggtg
     1081 ccgttcagcc ctgccatctc agagctcctt cagagtgtgc taaagttgca ggactcctgt
     1141 cccacaagct cagcatcccc agatgaatcc ggagctgact caatggaaag cttctcagaa
     1201 tccatctctg ccttaatggt tgatttaact ccaagaagtc ccaactcagc catccttctg
     1261 tctcctgtgg agattccatt cagcaaggca gctacggaag cccgtgcaaa ccgcctcatg
     1321 agagagctag attttgcagc ctgcacagaa gaaaggttgg acagcatcct ctcgctgtct
     1381 cagggaggtg tcgtgaggca gtactggagc agcagtttct tggtggatct actggctgtg
     1441 gctgcccctg tggtacccac tgttttgtgg gtattcagta ctcagagagg gggtacagat
     1501 cctgtctaca acattggagc cctgctccgg ggctgctgtg tggtggctct acactcccta
     1561 cgccgcacag ctttccacat gaaaacctaa ttagtcgtta ccatgtgcca atgtatctgt
     1621 gtagcgtggt gccaggtaga gcaacctcag gtggatcagt ggaagtctct attgtcattt
     1681 ttgctccttg ctatttgatt tgcactatag tcagttgcag cctgttcact gtttaaacca
     1741 gaggtatctt ccaaggcatg gaaacctggt tctggtagat gtcccaccag agtggcgtag
     1801 aaagcatgct tgtgcccctg ccgtgttgtc tgaggtgccc gttcttatac taatggttca
     1861 gaaagagaaa atgcagtttg cactttcacc acagcctctc taaggctggg catgttatct
     1921 ccttgctttg ctttgtgctg ttttaaaatg tgtaattgtt ccagcattcc aatggtcttg
     1981 tgcatagcag gggactgtaa ccaaaaataa aaatgtattt gtgtaattag ttcaaagaag
     2041 actcgaatag ctctttattg tctttcttgg ggttgataaa gtttgagtgt ttggattttt
     2101 ttttaaatgt agctccaaag tcttaaaagg ctcatttgct cttaaacctg tcagttgatg
     2161 atactatgta aatttacaat gtactaactt attttttgct tattatatat agtggttctt
     2221 tttttggaaa ttatttgtac ccacacactt cagcatgaaa ataaagatta gtgtttccat
     2281 ttaaa
//
