LOCUS       XM_039080176            2866 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus syntabulin (Sybu), transcript variant
            X6, mRNA.
ACCESSION   XM_039080176
VERSION     XM_039080176.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086025) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2866
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2866
                     /gene="Sybu"
                     /gene_synonym="Golsyn; Ocsyn; RGD1564335"
                     /note="syntabulin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 111 long SRA reads, 17
                     Proteins"
                     /db_xref="GeneID:500865"
                     /db_xref="RGD:1564335"
     CDS             177..2171
                     /gene="Sybu"
                     /gene_synonym="Golsyn; Ocsyn; RGD1564335"
                     /codon_start=1
                     /product="syntabulin isoform X6"
                     /protein_id="XP_038936104.1"
                     /db_xref="GeneID:500865"
                     /db_xref="RGD:1564335"
                     /translation="MGPLRESKEQRVQHQEKEFSRSRIPRLILRPHLPQQQQQQQNKV
                     SPASESPFSEEESREFNPSSSGRSARTISSNSFCSDDTGCPSSQSVSPVKTPSDTGHS
                     PIGFCPGSDEDFTRKKCRIGMVGEGNIQSARYKKESKGGIIKPGSEADFSSSSSTGSI
                     SAPEVHMSTTGNKRASFSRNRGPHGRSNGAPSHKSGSSPPSPREKDLVSMLCRNPLSP
                     SNIHPSYAPSSPSSSNSGSYKGSDCSPVMRRSGRYMSCGENHGVKPPNPEQYLTPLQQ
                     KEVTVRHLRTKLKESERRLHERESEIMELKSQLARMREDWIEEECHRVEAQLALKEAR
                     KEIKQLKQVIETMRSSLADKDKGIQKYFVDINIQNKKLESLLQSMEMAHNSSLRDELC
                     LDFSFDSPEKSLPLSSTYDKMADGLSLEEQITEEGADSELLVGDSMAEGTDLLDEIVT
                     ATTTESGDLEFVHSTPGPQALKPLPLVSQEEGIVVVEQAVQTDVVPFSPAISELLQSV
                     LKLQDSCPTSSASPDESGADSMESFSESISALMVDLTPRSPNSAILLSPVEIPFSKAA
                     TEARANRLMRELDFAACTEERLDSILSLSQGGVVRQYWSSSFLVDLLAVAAPVVPTVL
                     WVFSTQRGGTDPVYNIGALLRGCCVVALHSLRRTAFHMKT"
     polyA_site      2866
                     /gene="Sybu"
                     /gene_synonym="Golsyn; Ocsyn; RGD1564335"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atcacccaac atcgggtcac cgagagacgg cagcgcttgc tcgcacagct gataggatta
       61 ggagcccgtg ctttgtcggc cctgattgag tccaagacag ccccggcata cggcatacac
      121 aggtgcctcc tcctggacgg cggcggcggc gcggggagcc tgcaggcaac gacgagatgg
      181 gacccctccg agagagcaag gagcagagag tccagcatca ggagaaggag ttctccagga
      241 gccggattcc caggttgatt ctgcgacccc atctgcctca gcagcagcag cagcagcaga
      301 acaaggtttc cccagcctcc gagtctccct tttcagagga agaaagtaga gagttcaacc
      361 ccagcagctc cggacgttca gcaaggacaa ttagcagcaa cagcttctgc tcagacgaca
      421 caggttgtcc cagcagccag tcggtatccc ctgtgaagac tccctcagac actggacaca
      481 gtcccattgg cttttgccct ggaagtgatg aagattttac caggaagaaa tgcaggattg
      541 ggatggttgg tgagggaaat atccaatcag ctcgttataa aaaagaatcc aagggaggca
      601 tcataaagcc aggtagtgaa gcagatttta gctcctcaag cagcacaggc agcatctcgg
      661 ctcctgaggt ccacatgtcc acgacaggaa acaagcgagc ctctttctca cgcaacagag
      721 gtcctcatgg gcggagcaat ggagcaccat cccacaagtc tggcagcagc ccaccgtccc
      781 caagggaaaa agaccttgtg tctatgctgt gcagaaatcc actgagcccc agtaacatcc
      841 atcctagcta cgccccttct tctccaagta gcagcaactc cggctcctac aaaggaagcg
      901 attgtagtcc agtcatgagg aggtctggac gatatatgtc ttgtggagaa aatcatggcg
      961 tcaaaccccc aaatccagaa cagtatttga cacctctgca gcagaaggag gtcacagtga
     1021 ggcatttgag gaccaagctg aaggagtctg agcgccgact ccatgagagg gaatctgaaa
     1081 tcatggagct caagtctcag ctggctcgga tgagggaaga ctggatagag gaagagtgcc
     1141 acagggtgga ggctcagttg gcgctcaaag aagccagaaa agagattaag cagctcaaac
     1201 aggtcattga gactatgagg agcagcttgg ctgataaaga taaaggcatt cagaagtact
     1261 ttgtggacat aaacatccaa aacaagaaac tggagtctct gcttcaaagc atggagatgg
     1321 cgcacaatag ttccctgagg gatgaactgt gtctagactt ctccttcgat tccccagaga
     1381 aaagcttacc cctaagcagc acatatgaca agatggcgga cgggttgtct ctggaagaac
     1441 agataacaga ggaaggtgct gacagtgagc ttctggtggg agacagcatg gccgagggca
     1501 cagatctgtt agatgagata gtgactgcca ccaccacaga atccggtgac ctggagtttg
     1561 ttcattccac tccagggcca caagccctca agcctctccc cttggtgagc caggaagagg
     1621 gcattgtggt ggtggagcaa gcagtgcaga ccgatgtggt gccgttcagc cctgccatct
     1681 cagagctcct tcagagtgtg ctaaagttgc aggactcctg tcccacaagc tcagcatccc
     1741 cagatgaatc cggagctgac tcaatggaaa gcttctcaga atccatctct gccttaatgg
     1801 ttgatttaac tccaagaagt cccaactcag ccatccttct gtctcctgtg gagattccat
     1861 tcagcaaggc agctacggaa gcccgtgcaa accgcctcat gagagagcta gattttgcag
     1921 cctgcacaga agaaaggttg gacagcatcc tctcgctgtc tcagggaggt gtcgtgaggc
     1981 agtactggag cagcagtttc ttggtggatc tactggctgt ggctgcccct gtggtaccca
     2041 ctgttttgtg ggtattcagt actcagagag ggggtacaga tcctgtctac aacattggag
     2101 ccctgctccg gggctgctgt gtggtggctc tacactccct acgccgcaca gctttccaca
     2161 tgaaaaccta attagtcgtt accatgtgcc aatgtatctg tgtagcgtgg tgccaggtag
     2221 agcaacctca ggtggatcag tggaagtctc tattgtcatt tttgctcctt gctatttgat
     2281 ttgcactata gtcagttgca gcctgttcac tgtttaaacc agaggtatct tccaaggcat
     2341 ggaaacctgg ttctggtaga tgtcccacca gagtggcgta gaaagcatgc ttgtgcccct
     2401 gccgtgttgt ctgaggtgcc cgttcttata ctaatggttc agaaagagaa aatgcagttt
     2461 gcactttcac cacagcctct ctaaggctgg gcatgttatc tccttgcttt gctttgtgct
     2521 gttttaaaat gtgtaattgt tccagcattc caatggtctt gtgcatagca ggggactgta
     2581 accaaaaata aaaatgtatt tgtgtaatta gttcaaagaa gactcgaata gctctttatt
     2641 gtctttcttg gggttgataa agtttgagtg tttggatttt tttttaaatg tagctccaaa
     2701 gtcttaaaag gctcatttgc tcttaaacct gtcagttgat gatactatgt aaatttacaa
     2761 tgtactaact tattttttgc ttattatata tagtggttct ttttttggaa attatttgta
     2821 cccacacact tcagcatgaa aataaagatt agtgtttcca tttaaa
//
