LOCUS       XM_006241616            2869 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus syntabulin (Sybu), transcript variant
            X4, mRNA.
ACCESSION   XM_006241616
VERSION     XM_006241616.3
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086025) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006241616.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2869
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2869
                     /gene="Sybu"
                     /gene_synonym="Golsyn; Ocsyn; RGD1564335"
                     /note="syntabulin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 174 long SRA
                     reads, 20 Proteins"
                     /db_xref="GeneID:500865"
                     /db_xref="RGD:1564335"
     CDS             177..2174
                     /gene="Sybu"
                     /gene_synonym="Golsyn; Ocsyn; RGD1564335"
                     /codon_start=1
                     /product="syntabulin isoform X4"
                     /protein_id="XP_006241678.1"
                     /db_xref="GeneID:500865"
                     /db_xref="RGD:1564335"
                     /translation="MGPLRESKKEQRVQHQEKEFSRSRIPRLILRPHLPQQQQQQQNK
                     VSPASESPFSEEESREFNPSSSGRSARTISSNSFCSDDTGCPSSQSVSPVKTPSDTGH
                     SPIGFCPGSDEDFTRKKCRIGMVGEGNIQSARYKKESKGGIIKPGSEADFSSSSSTGS
                     ISAPEVHMSTTGNKRASFSRNRGPHGRSNGAPSHKSGSSPPSPREKDLVSMLCRNPLS
                     PSNIHPSYAPSSPSSSNSGSYKGSDCSPVMRRSGRYMSCGENHGVKPPNPEQYLTPLQ
                     QKEVTVRHLRTKLKESERRLHERESEIMELKSQLARMREDWIEEECHRVEAQLALKEA
                     RKEIKQLKQVIETMRSSLADKDKGIQKYFVDINIQNKKLESLLQSMEMAHNSSLRDEL
                     CLDFSFDSPEKSLPLSSTYDKMADGLSLEEQITEEGADSELLVGDSMAEGTDLLDEIV
                     TATTTESGDLEFVHSTPGPQALKPLPLVSQEEGIVVVEQAVQTDVVPFSPAISELLQS
                     VLKLQDSCPTSSASPDESGADSMESFSESISALMVDLTPRSPNSAILLSPVEIPFSKA
                     ATEARANRLMRELDFAACTEERLDSILSLSQGGVVRQYWSSSFLVDLLAVAAPVVPTV
                     LWVFSTQRGGTDPVYNIGALLRGCCVVALHSLRRTAFHMKT"
     polyA_site      2869
                     /gene="Sybu"
                     /gene_synonym="Golsyn; Ocsyn; RGD1564335"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atcacccaac atcgggtcac cgagagacgg cagcgcttgc tcgcacagct gataggatta
       61 ggagcccgtg ctttgtcggc cctgattgag tccaagacag ccccggcata cggcatacac
      121 aggtgcctcc tcctggacgg cggcggcggc gcggggagcc tgcaggcaac gacgagatgg
      181 gacccctccg agagagcaag aaggagcaga gagtccagca tcaggagaag gagttctcca
      241 ggagccggat tcccaggttg attctgcgac cccatctgcc tcagcagcag cagcagcagc
      301 agaacaaggt ttccccagcc tccgagtctc ccttttcaga ggaagaaagt agagagttca
      361 accccagcag ctccggacgt tcagcaagga caattagcag caacagcttc tgctcagacg
      421 acacaggttg tcccagcagc cagtcggtat cccctgtgaa gactccctca gacactggac
      481 acagtcccat tggcttttgc cctggaagtg atgaagattt taccaggaag aaatgcagga
      541 ttgggatggt tggtgaggga aatatccaat cagctcgtta taaaaaagaa tccaagggag
      601 gcatcataaa gccaggtagt gaagcagatt ttagctcctc aagcagcaca ggcagcatct
      661 cggctcctga ggtccacatg tccacgacag gaaacaagcg agcctctttc tcacgcaaca
      721 gaggtcctca tgggcggagc aatggagcac catcccacaa gtctggcagc agcccaccgt
      781 ccccaaggga aaaagacctt gtgtctatgc tgtgcagaaa tccactgagc cccagtaaca
      841 tccatcctag ctacgcccct tcttctccaa gtagcagcaa ctccggctcc tacaaaggaa
      901 gcgattgtag tccagtcatg aggaggtctg gacgatatat gtcttgtgga gaaaatcatg
      961 gcgtcaaacc cccaaatcca gaacagtatt tgacacctct gcagcagaag gaggtcacag
     1021 tgaggcattt gaggaccaag ctgaaggagt ctgagcgccg actccatgag agggaatctg
     1081 aaatcatgga gctcaagtct cagctggctc ggatgaggga agactggata gaggaagagt
     1141 gccacagggt ggaggctcag ttggcgctca aagaagccag aaaagagatt aagcagctca
     1201 aacaggtcat tgagactatg aggagcagct tggctgataa agataaaggc attcagaagt
     1261 actttgtgga cataaacatc caaaacaaga aactggagtc tctgcttcaa agcatggaga
     1321 tggcgcacaa tagttccctg agggatgaac tgtgtctaga cttctccttc gattccccag
     1381 agaaaagctt acccctaagc agcacatatg acaagatggc ggacgggttg tctctggaag
     1441 aacagataac agaggaaggt gctgacagtg agcttctggt gggagacagc atggccgagg
     1501 gcacagatct gttagatgag atagtgactg ccaccaccac agaatccggt gacctggagt
     1561 ttgttcattc cactccaggg ccacaagccc tcaagcctct ccccttggtg agccaggaag
     1621 agggcattgt ggtggtggag caagcagtgc agaccgatgt ggtgccgttc agccctgcca
     1681 tctcagagct ccttcagagt gtgctaaagt tgcaggactc ctgtcccaca agctcagcat
     1741 ccccagatga atccggagct gactcaatgg aaagcttctc agaatccatc tctgccttaa
     1801 tggttgattt aactccaaga agtcccaact cagccatcct tctgtctcct gtggagattc
     1861 cattcagcaa ggcagctacg gaagcccgtg caaaccgcct catgagagag ctagattttg
     1921 cagcctgcac agaagaaagg ttggacagca tcctctcgct gtctcaggga ggtgtcgtga
     1981 ggcagtactg gagcagcagt ttcttggtgg atctactggc tgtggctgcc cctgtggtac
     2041 ccactgtttt gtgggtattc agtactcaga gagggggtac agatcctgtc tacaacattg
     2101 gagccctgct ccggggctgc tgtgtggtgg ctctacactc cctacgccgc acagctttcc
     2161 acatgaaaac ctaattagtc gttaccatgt gccaatgtat ctgtgtagcg tggtgccagg
     2221 tagagcaacc tcaggtggat cagtggaagt ctctattgtc atttttgctc cttgctattt
     2281 gatttgcact atagtcagtt gcagcctgtt cactgtttaa accagaggta tcttccaagg
     2341 catggaaacc tggttctggt agatgtccca ccagagtggc gtagaaagca tgcttgtgcc
     2401 cctgccgtgt tgtctgaggt gcccgttctt atactaatgg ttcagaaaga gaaaatgcag
     2461 tttgcacttt caccacagcc tctctaaggc tgggcatgtt atctccttgc tttgctttgt
     2521 gctgttttaa aatgtgtaat tgttccagca ttccaatggt cttgtgcata gcaggggact
     2581 gtaaccaaaa ataaaaatgt atttgtgtaa ttagttcaaa gaagactcga atagctcttt
     2641 attgtctttc ttggggttga taaagtttga gtgtttggat ttttttttaa atgtagctcc
     2701 aaagtcttaa aaggctcatt tgctcttaaa cctgtcagtt gatgatacta tgtaaattta
     2761 caatgtacta acttattttt tgcttattat atatagtggt tctttttttg gaaattattt
     2821 gtacccacac acttcagcat gaaaataaag attagtgttt ccatttaaa
//
