LOCUS       NM_001395553            2201 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus synapse associated protein 1 (Syap1), mRNA.
ACCESSION   NM_001395553 XM_006256889
VERSION     NM_001395553.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Schmitt,D., Funk,N., Blum,R., Asan,E., Andersen,L., Rulicke,T.,
            Sendtner,M. and Buchner,E.
  TITLE     Initial characterization of a Syap1 knock-out mouse and
            distribution of Syap1 in mouse brain and cultured motoneurons
  JOURNAL   Histochem Cell Biol 146 (4), 489-512 (2016)
   PUBMED   27344443
REFERENCE   2  (bases 1 to 2201)
  AUTHORS   Yao,Y., Suraokar,M., Darnay,B.G., Hollier,B.G., Shaiken,T.E.,
            Asano,T., Chen,C.H., Chang,B.H., Lu,Y., Mills,G.B., Sarbassov,D.,
            Mani,S.A., Abbruzzese,J.L. and Reddy,S.A.
  TITLE     BSTA promotes mTORC2-mediated phosphorylation of Akt1 to suppress
            expression of FoxC2 and stimulate adipocyte differentiation
  JOURNAL   Sci Signal 6 (257), ra2 (2013)
   PUBMED   23300339
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2201)
  AUTHORS   Kang,D., Oh,S., Ahn,S.M., Lee,B.H. and Moon,M.H.
  TITLE     Proteomic analysis of exosomes from human neural stem cells by flow
            field-flow fractionation and nanoflow liquid chromatography-tandem
            mass spectrometry
  JOURNAL   J Proteome Res 7 (8), 3475-3480 (2008)
   PUBMED   18570454
REFERENCE   4  (bases 1 to 2201)
  AUTHORS   Sutherland,H.G., Mumford,G.K., Newton,K., Ford,L.V., Farrall,R.,
            Dellaire,G., Caceres,J.F. and Bickmore,W.A.
  TITLE     Large-scale identification of mammalian proteins localized to
            nuclear sub-compartments
  JOURNAL   Hum Mol Genet 10 (18), 1995-2011 (2001)
   PUBMED   11555636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1, FN805488.1 and FM069627.1.
            
            On Jul 19, 2021 this sequence version replaced XM_006256889.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.2360630.1,
                                           SRR22582416.722658.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-72                JAXUCZ010000021.1  35424034-35424105
            73-763              FN805488.1         1-691
            764-1218            FM069627.1         254-708
            1219-2201           JAXUCZ010000021.1  35457490-35458472
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq14"
     gene            1..2201
                     /gene="Syap1"
                     /note="synapse associated protein 1"
                     /db_xref="GeneID:302678"
                     /db_xref="RGD:1303113"
     exon            1..299
                     /gene="Syap1"
                     /inference="alignment:Splign:2.1.0"
     CDS             98..1180
                     /gene="Syap1"
                     /codon_start=1
                     /product="synapse-associated protein 1"
                     /protein_id="NP_001382482.1"
                     /db_xref="GeneID:302678"
                     /db_xref="RGD:1303113"
                     /translation="MFRGLSSWLGLKQPEGAAAGEEPPSGDKLSSGAAPPEKSSEGLV
                     EPTEEEEQLTEDPQFLHQAKGLGNYLYSFASAATKKITESVTETAQTIKKSVEEGKID
                     DILDKTIIGDFQKEQKKFVEEQHTKKSEAAVPPWVESHDEETIQQQILALSADKRNFL
                     RDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFYRISLI
                     KQSAQLTALAAQQQASGKEEKSSSRDDNLPLTEAVRPKTPPVVIKSQLKNQEDEEEIS
                     TSPGVSEFVSDAFDACNLNQEDLRKEMEQLVLDKKQEEATALEEDSTDWEKELQQELQ
                     EYEVVAESEKRDENWDKEIEKMLQES"
     exon            300..418
                     /gene="Syap1"
                     /inference="alignment:Splign:2.1.0"
     exon            419..485
                     /gene="Syap1"
                     /inference="alignment:Splign:2.1.0"
     exon            486..559
                     /gene="Syap1"
                     /inference="alignment:Splign:2.1.0"
     exon            560..699
                     /gene="Syap1"
                     /inference="alignment:Splign:2.1.0"
     exon            700..848
                     /gene="Syap1"
                     /inference="alignment:Splign:2.1.0"
     exon            849..907
                     /gene="Syap1"
                     /inference="alignment:Splign:2.1.0"
     exon            908..1055
                     /gene="Syap1"
                     /inference="alignment:Splign:2.1.0"
     exon            1056..2201
                     /gene="Syap1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtctccctc gaagaccaac agtcaggtca cccaaccgtt aacggtgcca gggctcttga
       61 gtgaggggac cgcggcggca gtgaccccgc gggcgggatg ttccgagggt tgagcagttg
      121 gttgggcttg aagcagcctg agggggcggc ggcgggagaa gagccgccca gcggggacaa
      181 gctgtcgtcg ggagccgcgc ctcctgagaa gagctccgag gggctcgtgg agcccaccga
      241 ggaggaggag cagctgacgg aggacccaca gttcctccac caggccaaag gccttggcaa
      301 ttatttgtat agttttgcaa gtgctgcgac aaagaagata actgagtctg ttacagaaac
      361 agctcagaca atcaagaaat ctgtggaaga aggaaaaata gatgacatcc ttgataagac
      421 tatcatagga gattttcaaa aagaacagaa aaaatttgtt gaggagcagc atacaaaaaa
      481 atcagaagcg gctgttcctc cgtgggttga gagtcatgat gaagagacaa ttcaacaaca
      541 gatattggct ttatcagctg acaagaggaa cttccttcgt gacccaccag caggtgtgca
      601 gtttaacttt gactttgatc agatgtaccc tgttgccctg gtcatgctcc aagaggatga
      661 actactaagc aagatgagat tcgccctcgt tcctaaactt gtgaaggagg aagtattctg
      721 gagaaactac ttctaccgga tctccctgat taagcagtcg gcccaactca ctgcactggc
      781 tgcccagcag caagcttctg gaaaggaaga aaaaagcagc agcagagatg ataatttgcc
      841 tctgacagag gcagtacggc ccaaaacacc acctgtggta atcaaatctc agcttaaaaa
      901 tcaagaggac gaagaggaaa tctctactag cccaggagtt tctgagtttg tcagtgatgc
      961 ctttgatgcc tgtaacttaa atcaggagga tttaagaaaa gaaatggaac agcttgtact
     1021 tgataagaag caagaggaag caactgcatt agaagaagat tctactgact gggaaaagga
     1081 gctacaacag gagctgcagg aatatgaagt ggtagcggag tctgagaagc gagatgaaaa
     1141 ctgggataaa gaaattgaaa aaatgcttca ggagagttaa ttgtctcccc aagccagttc
     1201 ttaacgttgt gctgacttca aattctgatg attgctgagt cagaaggcac aaaagtgtgt
     1261 aactttatgc aatatgaaat tattcttttt ctagctaaaa cttgcctctt aaatgaacag
     1321 ctattgtaat aataaaaaac aacaggatat tgtatgtaac atttcatata aataaaatta
     1381 gcgttcttat aggcggcaga gctatctatg ccacagaaac acaggttaaa tactagagtt
     1441 tgttttctac aaggttgaca acataattta ttctttagtt atggttttct ttatatgtct
     1501 ctttgttgat acatgatgaa agtacttaag aacttactat cagagtgacc aaattatacc
     1561 aaagaacgca aaagagagca ctttcaaaat attttcttgc cagatatttt ctaaaattct
     1621 gtccgaaaga gaaaagctga gatacttatg ttcacttgga atgacataaa tatcacccag
     1681 tttgacattc caaaacactc tgtgcagggc tagggatatg gtagacagtt gtcgttcaca
     1741 atgccccggg ttccatctcc actatctcag ctaaaaatga aagctagatt tgtttaaaga
     1801 aagttttact tctccctaga gacttctcat tttgctttgt tcagtatacc acaaattcaa
     1861 cattgtgctt tttgcaggaa ctgaggcctt cagtcctttt tgtattagta actgtcaaga
     1921 agcctgttta ccttaaggtt tattctcctg gtaacagtca ctatgtataa atgtctgaag
     1981 taaataatta gcctttatag aatgattttc cttgatgtag aacttaataa tacttactgt
     2041 attctgctat gccatcaggc atctgttcat agaatatgat cattttaaaa agagcaaggt
     2101 gatttaatgt tagaaaacta actaccattc acctttcata ttttcacagc acctttattt
     2161 cataaaggga aataaaatca agacatttct ttataagaga a
//
