LOCUS       NM_001106288            3871 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus switching B-cell complex subunit SWAP70 (Swap70),
            mRNA.
ACCESSION   NM_001106288 XM_001077735 XM_219262
VERSION     NM_001106288.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3871)
  AUTHORS   Guo Z, Neilson LJ, Zhong H, Murray PS, Zanivan S and Zaidel-Bar R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3871)
  AUTHORS   Chacon-Martinez CA, Kiessling N, Winterhoff M, Faix J,
            Muller-Reichert T and Jessberger R.
  TITLE     The switch-associated protein 70 (SWAP-70) bundles actin filaments
            and contributes to the regulation of F-actin dynamics
  JOURNAL   J Biol Chem 288 (40), 28687-28703 (2013)
   PUBMED   23921380
REFERENCE   3  (bases 1 to 3871)
  AUTHORS   Sivalenka RR and Jessberger R.
  TITLE     SWAP-70 regulates c-kit-induced mast cell activation, cell-cell
            adhesion, and migration
  JOURNAL   Mol Cell Biol 24 (23), 10277-10288 (2004)
   PUBMED   15542837
REFERENCE   4  (bases 1 to 3871)
  AUTHORS   Borggrefe T, Wabl M, Akhmedov AT and Jessberger R.
  TITLE     A B-cell-specific DNA recombination complex
  JOURNAL   J Biol Chem 273 (27), 17025-17035 (1998)
   PUBMED   9642267
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473956.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_219262.4, XM_001077735.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132273,
                              SAMD00132291 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3871
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q33"
     gene            1..3871
                     /gene="Swap70"
                     /note="switching B-cell complex subunit SWAP70"
                     /db_xref="GeneID:293410"
                     /db_xref="RGD:1305579"
     exon            1..156
                     /gene="Swap70"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..1815
                     /gene="Swap70"
                     /note="SWAP complex protein; SWAP-70 protein; SWA-70
                     protein; SWAP switching B-cell complex 70"
                     /codon_start=1
                     /product="switch-associated protein 70"
                     /protein_id="NP_001099758.1"
                     /db_xref="GeneID:293410"
                     /db_xref="RGD:1305579"
                     /translation="MGGLKDELLKAIWHAFTALDLDRSGKVSKSQLKVLSHNLCTVLK
                     VPHDPVALEEHFRDDDEGPVSNQGYMPYLNKFILEKVQDNFDKIEFNRMCWTLCVKKN
                     LTKSPLLITEDDAFKVWVIFNFLSEDKYPLIIVPEEIEYLLKKLTEAMGGGWQQEQFE
                     HYKINFDDNKDGLSAWELIELIGNGQFSKGMDRQTVSMAINEVFNELILDVLKQGYMM
                     KKGHKRKNWTERWFVLKPNIISYYVSEDLKDKKGDIMLDENCCVESLPDKDGKKCLFL
                     IKCFDKTFEISASDKKKKQEWIQAIHSTIHLLKLGSPPPHKEARQRRKELRRKLLAEQ
                     EELERQMKELQAANENKQQELESVRKKLEEAASRAADEEKKRLQTQVELQTRFSTELE
                     REKLIRQQMEEQVAQKSSELEQYLQRVRELEDMYLKLQEALEDERQARQDEETVRKLQ
                     ARLLEEESSKRAELEKWHLAQQQAIQTTEAEKQELEQQRVLKEQALQEAMAQLEQLEL
                     ERKQALEQYEGVKRKLEMATNTTKSWKDKVAHHEGLIRLIEPGSKNPHLITNWGPAAF
                     TQAELEEREKSWKEKKTTD"
     exon            157..297
                     /gene="Swap70"
                     /inference="alignment:Splign:2.1.0"
     exon            298..471
                     /gene="Swap70"
                     /inference="alignment:Splign:2.1.0"
     exon            472..699
                     /gene="Swap70"
                     /inference="alignment:Splign:2.1.0"
     exon            700..846
                     /gene="Swap70"
                     /inference="alignment:Splign:2.1.0"
     exon            847..955
                     /gene="Swap70"
                     /inference="alignment:Splign:2.1.0"
     exon            956..1137
                     /gene="Swap70"
                     /inference="alignment:Splign:2.1.0"
     exon            1138..1245
                     /gene="Swap70"
                     /inference="alignment:Splign:2.1.0"
     exon            1246..1412
                     /gene="Swap70"
                     /inference="alignment:Splign:2.1.0"
     exon            1413..1611
                     /gene="Swap70"
                     /inference="alignment:Splign:2.1.0"
     exon            1612..1708
                     /gene="Swap70"
                     /inference="alignment:Splign:2.1.0"
     exon            1709..3871
                     /gene="Swap70"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagtagctg aagggccgac ggggaatcgg gtctgttggg gcagcgcggc cgcggccatg
       61 gggggcttga aagacgaact gctcaaagcc atctggcacg ccttcaccgc gctcgacctg
      121 gaccgcagcg gcaaggtctc caagtcgcaa ctcaaggtcc tttcccataa cctgtgcacg
      181 gtgctgaagg ttccacacga ccctgttgcc cttgaggagc acttccggga tgacgatgag
      241 gggcctgtct ccaatcaggg ctacatgcca tatttaaaca agttcatttt ggaaaaggtc
      301 caagacaact ttgacaagat tgaattcaat agaatgtgtt ggaccctctg tgtcaagaaa
      361 aacctcacaa agagtccact ccttattaca gaagatgatg cattcaaagt gtgggtcatt
      421 ttcaactttt tgtcggagga caagtatcca ttaattattg tgccagaaga gatcgaatac
      481 ctacttaaga aacttacaga agctatggga ggaggttggc aacaagagca atttgaacat
      541 tacaaaataa actttgatga caataaagat ggcctgtctg cctgggaact tattgaacta
      601 attggaaatg gacagtttag caagggcatg gatcgtcaga cagtgtctat ggccattaat
      661 gaggtcttca atgagcttat tttagatgta ttgaaacagg gttacatgat gaagaaaggc
      721 cacaaacgga aaaactggac tgagcgctgg tttgtattaa aacccaacat aatttcctac
      781 tatgtgagcg aggatctgaa agataagaaa ggagacatca tgttggatga aaactgctgt
      841 gtggagtctc tgcctgacaa agatggaaag aaatgtcttt ttctaataaa atgctttgat
      901 aagacctttg aaatcagtgc ctcggataag aagaagaaac aagaatggat tcaggccatc
      961 cattctacca tccatctgtt gaagctgggc agccccccac cacacaagga agcccgccag
     1021 cgtcggaaag agctccgaag gaagctgctg gcagagcagg aggagctgga gcggcagatg
     1081 aaggagctcc aagcggccaa tgaaaacaag cagcaggagc tggagagtgt gcggaagaaa
     1141 ctggaggaag cagcatctcg tgccgcagac gaggaaaaga agcgcctgca gactcaggta
     1201 gagctacaga ccaggttcag cacagagttg gagcgggaga agctgatcag acagcaaatg
     1261 gaggagcagg ttgcccagaa gtcctctgaa ctggagcagt atctgcagcg agttcgggag
     1321 ctggaagaca tgtacctaaa gctgcaggag gcactggagg acgagaggca ggcccggcag
     1381 gatgaagaga ctgtgcgcaa gcttcaggcc aggctgctgg aggaagagtc ttctaagagg
     1441 gcagagctgg aaaagtggca cctggcacag cagcaggcca ttcagacaac agaggcggag
     1501 aagcaggagt tggaacagca gcgtgtcctg aaggagcagg ccctgcagga ggccatggca
     1561 cagctggagc agctggagtt ggagcggaag caggccctgg agcagtatga gggagtcaaa
     1621 aggaagctag agatggcaac aaatacgacc aagagctgga aggacaaagt ggcccatcat
     1681 gagggattaa tacgcttgat agaaccaggt tccaagaacc ctcacctgat caccaactgg
     1741 ggacctgcag cattcacgca ggcagagctc gaggagcgag agaagagctg gaaagagaag
     1801 aagaccacag actgacagct gtcccagcgg ccaccccagt cagtcacatc agtgaggagt
     1861 cgagcttcgt gcctgggaca gggacactgg ctttgctgct tctagtctcc cctcaggact
     1921 ccagcaggtt ccctgtgagg aggatgccat atttaccttc tagcgaggtc tcagctctcc
     1981 tgagcaagaa cataggcacg ggtgtggctg gggccacttt cactgtcgcc ttctgcagcc
     2041 cttgcagccc ccagtctcag cccctccttg gacaggaggt cagctgtctc ctcacgcagc
     2101 acatcccctc cactgattgg ccagtctgct tgccttttcg tgtcaagtga cacggcaagc
     2161 cttcgtgttg gtgtctgatg gacaggtcac cagccactgc ccttgtggat gggatctggc
     2221 tggtgacgct tcccagcttc agctgagaca cttcctttcc tgaccaccac acacagggct
     2281 ttcgcctcat ggcattttct ttccctctcc tcaaagcaaa acataccctg cctcagtgcc
     2341 tcttcttagt tcttcaggtg ttctgtcccc ggctgcctgt gggaatccat ggtgattgga
     2401 tagtttggga ggttacgtgg gcacagtgga agctgacagt atgtgggtct gtcagatgta
     2461 aagtgtcaca ggatgatggc agaccctgtg gctttctcta ggactgtatc tctctctgct
     2521 tcccctccta gggtgacaca ggtcttggtt tctgtgcttc tctctgagga ctgcttttag
     2581 ctataacctg ctctgagccc gagactagtg cttatgaggg taagcctcag cacatcgctg
     2641 ggctctgtaa cagcagtgac tccatggaca gcccagaggc taacatatga gcaggaaggg
     2701 gatctgtgtg ttacagaaaa ggtgggattc agtagcagag cagagaaccc caagtgtcgg
     2761 tccagccttg ccttggagca agcagtaagg aggccattct agacatgcgc aagtctagaa
     2821 tagattccag tgttcctgga tctacataag gactggatag aattcattaa tctctacctt
     2881 ttatgattgg aaaacatttg ccaatggaag tcttaacaat ttttcttaag attttgggat
     2941 acttaacaaa agtaatttta tttaatgttt atagctgcct tcatacagtt tagatttata
     3001 tgcaaagtat caccgtgtca tgaaccttct tggttagcag ataacttgcg tgtaggcttg
     3061 ggtctgacca ttctcaccgt gtttccttgc cagtgctgct gggagtcaga ccaaggggac
     3121 cagagtgccc ctgtcttgat gatatctcct agggacccag tggccctgga gagaagagga
     3181 aaagaaggta ctgggtggca tgaaatgtct ggacggaagc aggggcctgg ggttcgggag
     3241 agactgggat aaaggaattg ctgggtccag gctggcacag cctccctcct taaacctgga
     3301 ctatcttaaa gcacaccaga gcgtgaccgt agctgccaca gccctccttg tctggtctgc
     3361 gagcctgaat gctgcgtgct ccctcctgca gtgctgtatg ggctatgcag aaggtgtctg
     3421 cagtctagcg tctgttactg gttgccacac cggcttcagt agcactgtgt ctgggaagtg
     3481 aaagtccttt ttaaacagcg tgtaagagtg cacagctgtg gactgtgcga ctcccatttg
     3541 gccgatgctc tgatgctcgt gggcctctcc taagactcac ggtgctctca gctaagtgcc
     3601 tgtagacccc ctgcctcatc tctgtaacaa cgacaggaag cttcgggaat gtctgtgttt
     3661 cattggaatc aacccttccc tccaactaga ggcgagattg tctgtaggaa ttgtgagtga
     3721 aaagcatttg aaaatgtttt ggaatctact gtattgagaa tgaacaaaat atttataatt
     3781 ttaaagtatt cttatctaca tgtacaatgt aatgtgctcc actttttatt ttttgctaat
     3841 ttttctaaga tattaaaatg ttttctatgg g
//
