LOCUS       NM_134404               1951 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus SV2 related protein (Svop), mRNA.
ACCESSION   NM_134404 XM_008769315
VERSION     NM_134404.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1951)
  AUTHORS   Janz,R., Hofmann,K. and Sudhof,T.C.
  TITLE     SVOP, an evolutionarily conserved synaptic vesicle protein,
            suggests novel transport functions of synaptic vesicles
  JOURNAL   J Neurosci 18 (22), 9269-9281 (1998)
   PUBMED   9801366
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On or before Jun 30, 2021 this sequence version replaced
            XM_008769315.3, NM_134404.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF060173.1, SRR26360194.2040759.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-220               JAXUCZ010000012.1  48191549-48191768
            221-381             JAXUCZ010000012.1  48215817-48215977
            382-467             JAXUCZ010000012.1  48216839-48216924
            468-566             JAXUCZ010000012.1  48218864-48218962
            567-638             JAXUCZ010000012.1  48219619-48219690
            639-763             JAXUCZ010000012.1  48221097-48221221
            764-827             JAXUCZ010000012.1  48229032-48229095
            828-953             JAXUCZ010000012.1  48232950-48233075
            954-1082            JAXUCZ010000012.1  48233907-48234035
            1083-1156           JAXUCZ010000012.1  48234923-48234996
            1157-1233           JAXUCZ010000012.1  48238586-48238662
            1234-1341           JAXUCZ010000012.1  48241890-48241997
            1342-1453           JAXUCZ010000012.1  48244446-48244557
            1454-1535           JAXUCZ010000012.1  48245698-48245779
            1536-1625           JAXUCZ010000012.1  48247052-48247141
            1626-1951           JAXUCZ010000012.1  48249615-48249940
FEATURES             Location/Qualifiers
     source          1..1951
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..1951
                     /gene="Svop"
                     /note="SV2 related protein"
                     /db_xref="GeneID:171442"
                     /db_xref="RGD:620277"
     exon            1..220
                     /gene="Svop"
                     /inference="alignment:Splign:2.1.0"
     CDS             186..1832
                     /gene="Svop"
                     /note="synaptic vesicle 2-related protein-like"
                     /codon_start=1
                     /product="synaptic vesicle 2-related protein"
                     /protein_id="NP_599231.3"
                     /db_xref="GeneID:171442"
                     /db_xref="RGD:620277"
                     /translation="MEEDLFQLRQLPVVKFRRTGESARSEDDAASGEHDVQIEGVRVG
                     LEAVELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMM
                     ILSILAPQLHCEWRLPSWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWT
                     LYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWA
                     IGTVFEVLLAVFVMPSLGWRWLLLLSAAPLLVFAVLCFWLPESARYDVLSGNQEKAIA
                     TLKRIATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGL
                     VLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLW
                     VIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTPE
                     VYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL
                     PIETKGRALQESSHREWGQEMVGRGTNSTGVPRSNSGSQE"
     exon            221..381
                     /gene="Svop"
                     /inference="alignment:Splign:2.1.0"
     exon            382..467
                     /gene="Svop"
                     /inference="alignment:Splign:2.1.0"
     exon            468..566
                     /gene="Svop"
                     /inference="alignment:Splign:2.1.0"
     exon            567..638
                     /gene="Svop"
                     /inference="alignment:Splign:2.1.0"
     exon            639..763
                     /gene="Svop"
                     /inference="alignment:Splign:2.1.0"
     exon            764..827
                     /gene="Svop"
                     /inference="alignment:Splign:2.1.0"
     exon            828..953
                     /gene="Svop"
                     /inference="alignment:Splign:2.1.0"
     exon            954..1082
                     /gene="Svop"
                     /inference="alignment:Splign:2.1.0"
     exon            1083..1156
                     /gene="Svop"
                     /inference="alignment:Splign:2.1.0"
     exon            1157..1233
                     /gene="Svop"
                     /inference="alignment:Splign:2.1.0"
     exon            1234..1341
                     /gene="Svop"
                     /inference="alignment:Splign:2.1.0"
     exon            1342..1453
                     /gene="Svop"
                     /inference="alignment:Splign:2.1.0"
     exon            1454..1535
                     /gene="Svop"
                     /inference="alignment:Splign:2.1.0"
     exon            1536..1625
                     /gene="Svop"
                     /inference="alignment:Splign:2.1.0"
     exon            1626..1951
                     /gene="Svop"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcccactcct gtcggtctcc ggcggcagcg gctggctttg tctcccgggc agggctccct
       61 cccccagcag ctgccctgcg aggaagccgc ggagctgtcc agcatcccgg tgctgaaagc
      121 cgaagcgccg gccctgcttc accatgtaag ggtcatgccc aggctcgccc tggcgcagcg
      181 cggacatgga ggaggacctg ttccagctca ggcagttgcc ggtggtgaaa ttccgccgca
      241 caggagagag cgcacggtca gaggacgacg cggcttccgg ggaacatgat gttcagattg
      301 agggggtccg agtgggccta gaagctgtcg agctggatga tggagcagct gtccccaagg
      361 agtttgccaa tcccactgat gacactttca tggtcgaaga tgcggtggaa gccattgggt
      421 tcggaagatt ccagtggaag ctctctgttc tcaccggctt ggcttggatg gcggacgcca
      481 tggagatgat gattctgagc atcctggcgc ctcagctgca ctgtgagtgg cgactcccca
      541 gctggcaggt ggcgctgctg acttcggtgg tcttcattgg tatgatgtcc agttctacgc
      601 tctggggaaa catctcggat cagtatggca ggaaaacagg gctgaagatc agtgtgttct
      661 ggaccctgta ctacggcatc ctcagcgctt tcgcgccagt gtatagctgg atcctggtgc
      721 tccgaggcct cgtgggcttt gggattggag gggtgcctca gtcggtgacc ctgtacgccg
      781 agttcctccc catgaaggcc agagccaagt gcattttgct gattgaggtt ttctgggcca
      841 tcgggaccgt gttcgaggtg cttctggctg tgtttgtgat gcccagcctg ggctggcgct
      901 ggctgctgct gctgtcggcc gctccactac ttgtctttgc tgttctgtgt ttctggctgc
      961 cagagagtgc taggtacgat gtgctgtctg ggaaccagga aaaggcgatt gctaccttaa
     1021 agcggatcgc aacagaaaat ggagccccca tgcctctggg gaagctcatc atctccagac
     1081 aggaagaccg aggcaaaatg agggaccttt tcacacccca ctttcgttgg acaactctgc
     1141 tgctgtggtt tatatggttc tccaatgcct tctcttatta cggcttggtt ctgctcacca
     1201 cagaactctt ccaggccgga gatgtttgca gcatctccag ccggaagaag gcggtggaag
     1261 ccaaatgcag cctggcttgt gagtacctca gcaaagagga ttacatggac ctgctgtgga
     1321 ccaccctgtc tgagttccca ggtgtccttg tgactctgtg ggtcatcgac cgcctgggcc
     1381 gcaagaagac catggctctg tgtttcgtca tcttttccct ctgcagcctc ctgctgttca
     1441 tctgcattgg aagaaatgtg ctaaccctct tactgttcat tgcaagagcg tttatttctg
     1501 gaggcttcca agcagcctac gtttacacgc ctgaggtgta tccaacggcg acgagggcgc
     1561 tgggcctggg cacctgcagc ggcatggcga gagtgggcgc gctcatcact ccattcatag
     1621 ctcaggtgat gctggaatct tccgtgtacc tgaccctggc cgtctacagt ggctgctgcc
     1681 tccttgctgc cttggcctcc tgctttctgc ccatcgagac caaaggccga gcactgcagg
     1741 agtccagcca ccgggagtgg ggccaggaga tggttggccg agggacaaac agcacaggcg
     1801 tccccaggtc gaactctggc tctcaggagt agtgacccct gggagttgag ctggtctttg
     1861 aggccggagc ctagaaagct ggcagagccc agctgggcca ctaacggtca ctgccgacat
     1921 caagaacttt ccccgagtgg gcgaagtgaa c
//
