LOCUS       XM_039087645            4314 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SUZ12 polycomb repressive complex 2
            subunit (Suz12), transcript variant X2, mRNA.
ACCESSION   XM_039087645
VERSION     XM_039087645.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087645.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4314
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4314
                     /gene="Suz12"
                     /note="SUZ12 polycomb repressive complex 2 subunit;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 116 ESTs, 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 135 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:688041"
                     /db_xref="RGD:1593621"
     CDS             247..2394
                     /gene="Suz12"
                     /codon_start=1
                     /product="polycomb protein SUZ12 isoform X2"
                     /protein_id="XP_038943573.1"
                     /db_xref="GeneID:688041"
                     /db_xref="RGD:1593621"
                     /translation="MAPQKHGGGGGGGSGPSAGSGGGGFGGSAAAVAAAVASGGKSGG
                     GGCGGGGGYSASSSSAAAAGAAVLPVKKPKMEHVQADHELFLQAFEKPTQIYRFLRTR
                     NLIAPIFLHRTLTYMSHRNSRTNIKSLSAHLQLTFTGFFHKNDKPSQNSENEQNSVTL
                     EVLLVKVCHKKRKDVSCPIRQVPTGKKQVPLNPDLNQTKPGNFPSLAVSSNEFEPSNS
                     HMVKSYSLLFRVTRPGRREFNGMINGETNENIDVSEELPARRKRNREDGEKTFVAQMT
                     VFDKNRRLQLLDGEYEVAMQEMEECPISKKRATWETILDGKRLPPFETFSQGPTLQFT
                     LRWTGETNDKSTAPVAKPLATRNSESLHQENKPGSVKPAQTIAVKETLTTEMQTRKEK
                     DTSNETRQKLRIFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCHSRF
                     IFNYVYHPKGARIDVSINECYDGSYAGNPQDIHRQPGFAFSRNGPVKRTPITHILVCR
                     PKRTKASMSEFLESEDGEVEQQRTYSSGHNRLYFHSDTCLPLRPQEMEVDSEDEKDPE
                     WLREKTITQIEEFSDVNEGEKEVMKLWNLHVMKHGFIADNQMNHACMLFVENYGQKII
                     KKNLCRNFMLHLVSMHDFNLISIMSIDKAVTKLREMQQKLEKGESAAPANEDIAEEQN
                     GTANGFSETNSKEKALETDGVSGVPKQSKKQKL"
ORIGIN      
        1 agtgggcgga gcgagggcag ggtagggtga gcggcctccg aagcggagcg gggctcggag
       61 gagacacttt tttttcctcc ctccttccct cctctcctcc tcccttccct tcccctctcc
      121 tcccctctct cctccttccc ccctcggtcc gccggagcct gctggggcga gcggttggtg
      181 tagcaggcgc tcactctccg gggccgcccg gcgggtagct ggcgggggga ggaggcagga
      241 accgcgatgg cgcctcagaa gcacggcggt gggggagggg gcggttcggg gcccagcgcg
      301 gggtccgggg gaggcggctt cgggggttcg gcggcggcgg tggcggcggc ggtggcttcg
      361 ggcggtaaat ccggcggcgg gggctgtgga ggcggcggcg gttactcggc ctcctcctct
      421 tcggcggcgg cggctggggc cgcggtatta ccggtgaaga agccgaaaat ggagcacgtc
      481 caggctgacc acgagctttt cctccaggcc tttgagaaac caacacagat atatagattt
      541 cttcgaactc gaaatcttat agcaccaata tttttgcaca gaactcttac ttacatgtct
      601 catcgaaact ccagaacaaa catcaaaagc ttgtctgcgc atttacaact tacatttact
      661 ggtttcttcc acaaaaatga taagccatca caaaactcag aaaatgaaca aaattctgtt
      721 actctggaag tcctgcttgt gaaagtttgc cacaaaaaga gaaaggatgt aagttgtcca
      781 ataaggcaag ttcctactgg taaaaagcag gtgcctttga atcctgacct caatcaaaca
      841 aaaccaggaa atttcccatc cctggcagtt tccagtaatg aatttgagcc tagtaacagc
      901 catatggtga agtcttactc attgctgttc agagtaactc gtcctggaag aagagagttt
      961 aatggaatga ttaatggaga aaccaatgaa aatattgatg tcagtgaaga acttccagcc
     1021 agaagaaaac gaaatcgtga agatggggaa aagacatttg ttgcacaaat gacagtgttt
     1081 gacaaaaaca ggcgtttaca acttttagat ggtgaatatg aagtagccat gcaggaaatg
     1141 gaagaatgtc caataagcaa gaaaagagca acatgggaga ctattcttga tgggaagaga
     1201 ctgcctccat ttgaaacatt ttctcaggga cctacattgc aatttactct tcgatggaca
     1261 ggagaaacca atgataagtc tacagctcct gttgccaagc cccttgccac tagaaattcg
     1321 gagagccttc atcaggaaaa taagcctggt tctgttaagc ctgcacaaac tattgctgtt
     1381 aaggagacac tgactacaga gatgcaaaca agaaaggaaa aggatacttc aaatgaaact
     1441 cgacagaaat taagaatatt ttatcagttc ctttataaca ataatacaag acaacagaca
     1501 gaagccagag acgacctgca ctgcccgtgg tgcactctca actgccggaa gctgtacagc
     1561 ttactcaagc atctaaaact ctgccacagc agattcatct tcaattatgt atatcatcca
     1621 aaaggtgcta ggatagatgt ttctatcaat gagtgttatg atggctccta tgcaggaaat
     1681 cctcaggaca ttcatcgaca acctggattt gcctttagtc gaaatggacc agtaaagaga
     1741 acacctatca cacacattct tgtgtgcagg ccaaagcgaa caaaagcaag catgtcggag
     1801 tttctggaat ctgaagatgg agaagtagag cagcagagaa catacagtag tggccacaat
     1861 cgtctgtatt tccacagtga tacctgctta cctcttcggc cacaagaaat ggaagtagat
     1921 agtgaagatg agaaagatcc ggaatggctg agagaaaaaa ccattactca aattgaagaa
     1981 ttttctgatg tgaatgaagg agagaaagaa gtaatgaaac tgtggaatct ccatgtcatg
     2041 aagcatggat ttattgctga caatcaaatg aatcatgcct gtatgctgtt tgtagaaaat
     2101 tatggacaga aaataattaa gaagaattta tgtcgaaact tcatgcttca tctagtcagc
     2161 atgcatgact ttaatcttat tagcataatg tcaatagata aagctgttac caagctccga
     2221 gaaatgcagc aaaaactaga aaaaggagaa tctgcggccc ctgcaaatga agacatagct
     2281 gaggaacaaa atgggacagc aaatggattc agtgaaacta actcaaaaga gaaagctttg
     2341 gaaacagacg gtgtctcagg ggttccaaaa cagagcaaaa aacaaaaact ctgagatcgg
     2401 gcaccgtgtt gtggacagac actgaagttg catctaggga attcagcctc tagcaagagt
     2461 tttggtttta ggttgtttgg tttttaatca tggatttgga acaggcagtg ttagatgatg
     2521 tctttgattt cagcacggag gttctgtggg tctgcttcgc ttctcctcac gtgcttatca
     2581 gctttagtga tgtcttcaca atttggtttt atagcctgaa tagcagtttt tcaaatagtt
     2641 aatttttttt tcttagttgt aacagtcatc tttttaaata tattgggtta atctagaaat
     2701 ttcacaccta aattttaatg cttgtttcat ttgtgactgt ttttctgctt tgtaattatg
     2761 agacattttc tgggaaagga aggttgggat gttaatgctg tcttagagat ggagaatttt
     2821 tgtgaaatta ttacattgcc acttttcccc aaactttgac tgttcagaaa tcatttgtgt
     2881 atttgggatg agaagttaaa atgcaagttc tgcatcagtt cctgttacaa ggtttaaaac
     2941 agcaccagtt cgcctcctgc ctgctgagag cgatgtgacc tttccatgca gtcacacagt
     3001 gtcatgtgca ctgatagaag tcactatttg ttttcaagtg gctgatttta gtgatcactt
     3061 cccagtttag cttttgactt gggcatgttt ttagttttcc ctttttgatt aggtatccca
     3121 tggggaattg ttccgtgcac actttgcact aggatgctaa agcaagagaa agagttggag
     3181 attaaaaagg caccactttg tggtggaagt gtcctgagtg tgaaccagaa gatgtcacac
     3241 cttgtttcct ttgtgatgtc cttcatgatt agaatatcca tacagataag ctgacttgaa
     3301 ttgttttgag caactttccc tgtgttgtgt tttatgcaca tattttgcgg ttgggttttc
     3361 tccaacagaa agtggtttca ctactggcat attaatgaac accaataggt ttttatccag
     3421 ctccaagcac tgtggttgaa taacatcacc tcaatttttt attatccttt aaagatattg
     3481 cattttcata ttctttattt ataaaggatc aatgctgctg taaatactgg tatttttaat
     3541 gttttaattt cattccacca ccatcagatg cagttcctta ttttgtttag taaagggaca
     3601 taagctttct catggtgtct tcagagattt ataaatgtaa atactgattt ggctggtctt
     3661 tacgatgtgt ttaactgtga ggctatttaa atagtgtgga tgtgacttgt catccagtat
     3721 taagttctta gttactggtt tttgtgttta aaaaaaatat aagaaagagg gaagctgcag
     3781 ttttcattgt aggctccctg gccggtaaac tctcctcatg agttcactga actctcattt
     3841 gcctctgggt agtgggttct aagcatttct cctgggcttt aatttgctaa agctgtgcac
     3901 atatgtaaaa aaaaaataga ttattttagg gaagatgtag gtgtaggatt attgcttatg
     3961 tcatttctta aagcagttat gctcttaatg cttaaaagaa ggctagcatt gtttgcacac
     4021 acaaaaaaaa attggtgatt tccctcccct gaatagtaat gaaattactt ctgttgagta
     4081 aactttttat gtcatcttat aataaaagct aaaaatgccc tttgtttcta tttataaaaa
     4141 aaagcttttc tatatgtacc tttgagaaca gattttgaag aaatcatgta agatgataaa
     4201 gcatttgaat ggtacaatag atgtaaaaaa attcagttta aaagaagcgt ttgtttctac
     4261 attaaatgtt tatttgaaat gaaatgattt tgtacataaa gtcattaata taaa
//
